Search:   
TC#:   

Calculation of Protein Properties

  • Hydropathy Analysis - Hydropathy analysis using the Kyte-Doolittle scale combined with hydrophobic moment and TMS prediction.
  • EMBOSS Pepwindow - EMBOSS Hydropathy Analysis
  • EMBOSS Hmoment - EMBOSS Hmoment calculates the hydrophobic moment, the hydrophobicity of a peptide measured for a specified angle of rotation per residue.
  • EMBOSS Pepwheel - creates a helical wheel plot that displays a protein sequence looking down the axis of the alpha helix. This view facilitates the identification of amphipathic TMSs.
  • Helixator - creates a helical wheel plot that displays a protein sequence looking down the axis of the alpha helix. This view facilitates the identification of amphipathic TMSs.
  • HMMTOP

Sequence Similarity Search

  • BLAST - Search against TC-DB with a protein or nucleotide sequence.
  • SSEARCH - Search against TC-DB using the Smith-Waterman algorithm.

Pairwise Sequence Alignment

Multiple Sequence Alignment Tools and Accessories

Other Sequence Analysis Tools

Download TCDB (FastA format)