(TMS Align V.2 by Vamsee Reddy #symphony.dev@gmail.com)

Sma2
                                                                                                                                            1-----------------          2-----------------        3-----------------            4-----------------------        5-------------------             6------------------------              7-----------------          8-----------------------                                       9------------------------          10-----------------        11------------- ----------- 
...........................................................................................................MNAPALSSWSLPALR............QRWQPRLPGLLLVGLIAAASLYLAELPWLQAHGLSALTVAIVAGIVVGNTLYPRLAPSSAAGVGFSKHWLLRAGIVLYGLRLTFQDIGHVGVTGVLMDVLVVASTFGLACWLGMRVFKMEREAAMLIGAGSAICGAAAVMAAEPVVRGRAAQ...VTVAVSTVVVFGTLAMFLYPALYALVQSHGWLAMDAQQYGLFTGATVHEVAQVVAAGRAVNEAAADTAVITKMVRVMLLAPFLVALSLWLARDG........KASADGSK.................ARIVVPWFAFGFVAVAGFNSLHLLPAGLQTGLVQLDTVLLAMAMAALGLTTHVSALRQAGLKPLLLALILFGWLLFGG.LAIHQGVLAVLG [11 TMSs]
Stma1
                                                                                                                                            1-----------------          2-----------------        3-----------------            4-----------------------        5-------------------             6------------------------              7-----------------          8-----------------------                                       9------------------------          10-----------------        11------------- ----------- 
...........................................................................................................MNAPALSSWSLPALR............QRWQPRLPGLLLVGLIAAASLYLAELPWLQAHGLSALTVAIVAGIVVGNTLYPRLAPSSAAGVGFSKHWLLRAGIVLYGLRLTFQDIGHVGVTGVLMDVLVVASTFGLACWLGMRVFKMEREAAMLIGAGSAICGAAAVMAAEPVVRGRAAQ...VTVAVSTVVVFGTLAMFLYPALYALVQSHGWLAMDAQQYGLFTGATVHEVAQVVAAGRAVNEAAADTAVITKMVRVMLLAPFLVALSLWLARDG........KASADGSK.................ARIVVPWFAFGFVAVAGFNSLHLLPAGLQTGLVQLDTVLLAMAMAALGLTTHVSALRQAGLKPLLLALILFGWLLFGG.LAIHQGVLAVLG [11 TMSs]
Sma1
                                                                                                                                            1-----------------        2------------------        3-----------------            4------------------------        5-------------------               6-----------------------            7-----------------          8-----------------------                                       9-----------------------            10-----------------        11------------- ----------- 
...........................................................................................................MNAPALSPWSLPALR............QRWQPRLPGLVLVGLIAAASLYLAELPWLQAHGLSALTVAIVAGIVVGNTFYPRLAPGSAAGVGFSKHWLLRAGIVLYGLRLTFQDIGHVGVTGVLMDVLVVASTFGLACWLGVRVFKMEREAAMLIGAGSAICGAAAVMAAEPVVRGRAAH...VTVAVSTVVVFGTLAMFLYPALYALVQSHGWLAMDARQYGLFTGATVHEVAQVVAAGRAVNEAAADTAVITKMVRVMLLAPFLIALSLWLARGG........KASADGSK.................ARIVVPWFAFGFVAVAGFNSLHLLPAGLQAGLVQLDTVLLAMAMAALGLTTHVSALRQAGLKPLLLALILFAWLLFGG.LAIHQGVLAVLG [11 TMSs]
Psae1
                                                                                                                                           1-----------------          2------------------        3-------------------              4-------------------        5-----------------               6-----------------                  7-------------------            8----------------------                                        9-------------------            10-------------------        11-----------------         
...........................................................................................................MHTLPVKTGTRPLA..............QVQKLIPGLLLSAALAGAAILLGRSQWLQHNGISALTLAIVLGIVVGNTLYPRIAAGSAAGVGFSKQILLRAGIILYGLRLTFQDIAGVGLHGVLLDALMLASTFGLACLLGTRLFGLDRTTTLLIGAGSSICGAAAVMATEPVVRGRAEQ...VAVAVSTVVVFGTLGIFLYPALFQSDQDWGLLPRDPGTWGVYIGATVHEVAQVVAAGRSIGIEAADTAVIAKMVRVMMLAPFLILLSAWLARDK........AHRRQHSG................ATKITIPWFAVGFVLVAGLNSLVSLPPALVSHVNDLDTFLLAMAMAGLGLGTHLSAIRRAGLKPLLLAALLFAWLVLGGGFLTRLALA.... [11 TMSs]
Xaor1
                                                                                                                                           1------------------        2-------------------            3-------------------          4-------------------        5-------------------             6------------------------            7------------------          8-------------------                                           9---------------------            10-------------------        11------------- ----------- 
......................................................................................................MPSARRDQAAMHTTAVPAH..............RMRQLVPGLALTGVLACISMQLGKLGWLQANGISALTLAIVLGMLVGNTVYPRLGANAGAGVRFSKANLLRLGIILYGLRLTFQDIGNVGWTGVAIDATVLCSTFGLACFLGMRVFGLDRNTAMLIGAGSSICGAAAVLAAEPVVRGHAEQ...VMIAVATVVVFGTLAMFLYPVLYHLIAHYRWFDLSPTAYGVFAGSTIHEVAQVVAAGRAVSEQAATTAVIAKMVRVMMLAPFLVALSAYLSRDS........AKHTEALDGDRGDGDGDGDGDGTQRSDIVIPWFALGFVAVAGLNSLALLPHALVQQVIDIDTVLLAMAMAGLGLTTHVSAIRKAGIKPLALAAILFAWLVCGG.FAFNVGITAVLN [11 TMSs]
Asp1
                                                                                                                                           1-------------------        2-------------------                                    3-------------------              4-----------------               5-----------------                              6-------------------      7-----------------                                  8-----------------            9------------------              10-------------- ----        
..............................................................................................................MPLAPLTLASFT............TEPVRWLPGLLLSGAIAAGALHLAGQPFFVGHGLSTLTLAIVFGLLLGNTLYPRLAQTCAPGVGLAKQQLLRTGIVLYGLRLTFQDIAHMGWGGVAVDALALASTFGLACWLGQRVLGLDRRTTLLIGAGSSICGAAAVLATAPVARGRPQD...VAVAVATVVVFGTVGMFLYPALYRWNAAGGWIGMDAQQYGLYVGATVHEVAQVVAAGTAISSHAASTAVIAKMVRVMMLAPFLLILSFLLLRAQ........QASDASRG............ETGSPGAITIPWFALGFVAMAGVNSLDMLPPALVQAGVRLDDLLLAVAMAALGLTTHVHAVRAAGLKPLLLAAALFAWLLVAG.LLLSRYLPAWL. [10 TMSs]
Ppa2
                                                                                                                                                1-----------------    2---------------  ---                                    3-----------------------         4------------------------        5-----------------                      6-------------------            7-----------------                                        8-----------------------            9-----------------    10-----------------------      
............................................................................................................MVESANEARSSGR.............AGRWKQTGAKLFPGIAVSLLVAVTAQFLSDHYGAPAMLLALLMGLALN..FLAEEGTRTKSGIEYSARTVLRLGVALLGARISVDMLTELGGVMILLVIGGVVATILFGMVAAR.FFGRGWRMALLSGGAVAICGASAAMAIAAVLPKTDKSERNLAFTVMAVTVLSTIAMIAYPPLSS......WFGFTPLESGVFLGGTIHDVAQVVGAGFSVSPEVGETATVVKLIRVSMLAPVVLVFSLAIRAGR........LDADAPGG................TRPPLLPSFVIWFLVLAGLNSFGFIPVSVSYLAEQLSRWALLAAIAAVGIKTSLVRMMEVGGTAIGLVVVETVFLAGFVLAGVHLIG..... [10 TMSs]
Rsp1
                                                                                                                                                1------------------    2--------------  ---                   3-----------------    4------------------         5----------------------          6----------------------                  7------------------            8-----------------                                        9-----------------------    10-----------------            11-----------------------      
..........................................................................................................MAISPPHTDAKIVARG............TANLKAKAQELFPGVAMAIIVAVTAQFLAEHYATPAMLLALLLGIAVS..FLGEEG.KTVPGISFSARTLLRLGIAFLGVRVSMTLMMGLGWDLIALVVGGVVATIGFGLLVAR.FFGHKWRFALLTAGSVAICGASAAMAISAILPRDERSEERLIFTVMGVTVLSTIAMIAYPILVN......FLELNATQAGVFLGGTIHDVAQVVGAGFSISEQAGDSATLVKLIRVAMLAPIVLVASLVIRS..........FAELPSDG................KRPPLLPGFVVAFLGLAGLSSFGLIPTALSEFLSQSSRWLLLIAIAAVGMKTNLKQVLAVGGAAIALIIVETLFIAGLILAGITVLT..... [11 TMSs]
Ccr1
                                                                                                                                                1------------------        2----------  ------ ---            3-----------------        4--------------- ----        5------------------        6-------------------                    7-------------------        8----------------------                9---                ---   -------------        10---------------------              11-------------------         
MIKINHLEIRFQGEQNSPYPGNGNLSNNAFLRIRAILERLGFSQRGIHGPVVHASSQIGGRDLRPAHGRGLELWLHPAGRGSGLPHPWRPALRLRAHRQPDRAPPARASEQPLRQGRRALRRRPDQRRHRPRMTAAALRLGAARIGPGLLAGLLMAVLAKLLSQSLHAPAPLLAVVLGMMLG..ALGLQG.QLGAGLDVFAKPGLRLGVAMMGAQISWSEFAALGGPAVLASGAVVLGGLGIGALAGA.ALGLPLAEALIAAAACSICGASAALAASQAAPSSPENQRTTALVIVGVNLLSTVAMLAYPPIAN......ALGLTAHQAGVFFGLSIHDVAQVAGAGASVSPEVAGTAALAKLSRILWLGPAVVLIGLMLTRTA........QGGRISGL................QAP...PLFVWGFAALAAARGLNLIPPALVSALGACSGFLLLAGVGAISAKLGPKALLEVKPRLAILLVTLTVAVAILAYALTRIFF..... [11 TMSs]
Basp1
                                                                                                                                           1-------------------        2--------------  -----              3-------------------    4-------------------         5-------------------               6-------------------                7-------------------            8----------------     --        -                            9-------------------      10------------------              11-------------------        
................................................................................................................MNKLQYIFKN.........TLAARLPKWSSGVLLLLCIAGVSKYLGT..LFP..LVGSILFAIMIGIVIN..NTTGVHEVFQPGLSLTLKKLLKAAVVMLGVSLSFADILYIGRQSFLIILVSVILGIVITVWFGK.LLKMDRKLALLIGVGTSICGATAISAVKGVIDSDDNE...TAYAISVIVFFNLIAFFLYPVIGH......ILDLTATSFGIWAGTAVHDTSSSIAVGYVYGNEAGQVATTVKLARTLFLLPLILVLP.....IL........LRNE..............KQKGSQAAKKAFPWFVLLFLGVSVINSFVVIPAPAEEIVTDTAKFIIIMVMGAVGLQVNLKQFAKLGFKPLIAGLVASLAVSVISLMMILFL...... [11 TMSs]
Aor1
                                                                                                                                            1------------------  -    2---------------  ---                3------------------    4-------------------             5--------------------         6---------------------                  7-------------------        8-------------------                                          9-------------------        10-----------------            11------------------------     
.....................................................................................................................................MEFIKKCSVGIFFAAILAVVSNFISG..ILPNHIIGAGVFALIIGMMLN..PLTSKYPVFQQGFNFTSKKILRTAIILMGATLSFSQVLEVGKFSLVVMIFTLITAFGGGYLVGK.LFHMDWKLSSLISAGTGICGGSAIASIAPVIDAEDSD...IAYAISATFIFDVLMVVLFPIMGR......YFGMSDLGYGLWTGTAVNDTSSVVAAGYAFSDIAGGFSVIVKLTRTLSIVPVVLIFSYINQRIV........RKNETEYAFSNGSAPSTIQQNKKVEITKIFPWFILMFLGVVTIKSLGILPEFISSNISKISKFLMVMSLGAIGFKTNFKKLSKSGFLPMLHGFIISALVVIVSFLAQMAIGQL... [11 TMSs]
Csp8
                                                                                                                                           1-----------------          2--------------  ----              3------------------        4-----------------             5-------------------           6-------------------                   7------------------        8------------------                                        9-----------------        10----------------------              11-------------------        
.................................................................................................................MYTQMKN................TRSILPGLMISILISLISQYLTN....FIPNLGAALIAIFLGILLG..NTFLNKPYLKRGTKFSEKTLLEWSIVLNGMILDFQIIKQVGSAGFIFVILQMVLTILFAYWIGR.TMKFNKKMSLLMGAGNAVCGSSAIGTVSPVIEADKKD...KAMSITIVNVMGTLLMVLLPILSS.....VLYQNEVVQTSALIGGTVQSIGQVVASAKLVSTDVTNLSIVFKLMRVLLIVGVALCFSKLNTKEEEPLFSKTTTSSTSEVK..............KSSSLMTVPWFIIGFFFLFMLRSFLPLPSLVIHSSEVISNQFEITALAAIGLQVKFSDILKEGPRTMLYGLLIGFFQIVLAVVLITWLF..... [11 TMSs]
Tsp3
                                                                                                                                           1-------------------        2--------------  -----            3-------------------      4-------------------             5-------------------           6-------------------                 7-------------------        8------------------                                             9-------------------          10------------------            11-------------------      
...........................................................................................................MKTRNFMQQKFVN................VKELLPGLIVCIIIGLISKYVGT....FVPALGGATIAILLGLLLG..NTVLTHKSFYKGVRFSESNLLSYSIVLLGGTLSYKVILQLGVSGVSFIVLQMILTIIFCILVGK.KLGFSEDFRLLMAAGNAVCGSSAIGATAPVIKANDVD...KSITITLVNLTGTILMMILPFLTS.....ILYGNETIKSSALIGGTLQSVGQVVGSGSMVNHDVLQYATIFKIVRIIFLVFVILSFAKLKKDEE.......NHEAELHHQ..............QPKAKIKIPWYVIGFFIMCFLFSVGIINENISHGFKQISNYLEIFALAGIGMSVKFKDLMKAGVKSGIYCLLIGIAQIMIAVVLIGILL..... [11 TMSs]