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Multiple Sequence Alignment with Marked TMSs

Description: This program will mark your TMSs in a multiple sequence alignment. you are limited to 30 sequences. TMS prediction is carryed out by HMMTOP. Due to the licensing restrictions of HMMTOP only academic usage is allowed. We will soon provide an alternative TMS prediction program that commercial sites may use.
ALIGNMENT OPTIONS:
Matrix: Gap Open Penalty: Gap Extension Penalty:

DISPLAY OPTIONS:
Number of Amino Acids per Row: Color Coding of TMSs:

Please enter the protein sequences in FASTA format you want to analyze:

If you have any questions please e-mail: Can Tran - can@ucsd.edu