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3.A.1.2.14
Putative L-arabinose porter (Rodionov et al. 2010).

Accession Number:Q0HIQ6
Protein Name:Inner-membrane translocator
Length:405
Molecular Weight:42314.00
Species:shewanella sp. (strain mr-4) [60480]
Number of TMSs:10
Location1 / Topology2 / Orientation3: Cell inner membrane1 / Multi-pass membrane protein2
Substrate Arabinose

Cross database links:

eggNOG: COG1172
HEGENOM: HBG663180
RefSeq: YP_734118.1   
Entrez Gene ID: 4252561   
Pfam: PF02653   
KEGG: she:Shewmr4_198   

Gene Ontology

GO:0016021 C:integral to membrane
GO:0005886 C:plasma membrane
GO:0005215 F:transporter activity
GO:0006810 P:transport

External Searches:

  • Search: DB with
  • BLAST ExPASy (Swiss Institute of Bioinformatics (SIB) BLAST)
  • CDD Search (Conserved Domain Database)
  • Search COGs (Clusters of Orthologous Groups of proteins)
  • 2° Structure (Network Protein Sequence Analysis)

Analyze:

Predict TMSs (Predict number of transmembrane segments)
Window Size: Angle:  
FASTA formatted sequence
1:	MKSSAETLSS TRMSADLISP QMNASEAHSS ERQPRMQESD KTMVQEKNAR YQAGKSTSIG 
61:	RYLWPLLALT ILLLANLFID SSFFNISYQD DRLYGSLIDI LNRSAPVALL SIGMSLVIAT 
121:	GGIDLSVGAV MAIAGAVCAN LLLVPDISLV TVIAAGLIVG LLAGCINGGL VSFLGIQPIV 
181:	ATLLLMVAGR GVAQLINQGQ IITFQHPGFA AIGVGQFLGL PMPVWIVIGM LTFSQLLLRK 
241:	TALGLFIEAV GCNAKASRYL GINDKSIKLF AYGIAGLCAA LAGMISTADI QGSDANNAGL 
301:	WLELDAVLAV VIGGAALTGG RFSLILSVVG ALIIQTLATT IIVSGLPAKF NLLIKAIVIL 
361:	TVLLLQSAKF RRQLSALFTS KRQANAKPAE KGTSAKASTA TGEKL