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3.A.1.2.14
Putative L-arabinose porter (Rodionov et al. 2010).

Accession Number:Q0HIQ8
Protein Name:Periplasmic binding protein/LacI transcriptional regulator
Length:313
Molecular Weight:33853.00
Species:shewanella sp. (strain mr-4) [60480]
Number of TMSs:1
Location1 / Topology2 / Orientation3: Cell inner membrane1 / Multi-pass membrane protein2
Substrate Arabinose

Cross database links:

eggNOG: COG1879
HEGENOM: HBG617058
RefSeq: YP_734116.1   
Entrez Gene ID: 4252559   
Pfam: PF00532   
KEGG: she:Shewmr4_198   

External Searches:

  • Search: DB with
  • BLAST ExPASy (Swiss Institute of Bioinformatics (SIB) BLAST)
  • CDD Search (Conserved Domain Database)
  • Search COGs (Clusters of Orthologous Groups of proteins)
  • 2° Structure (Network Protein Sequence Analysis)

Analyze:

Predict TMSs (Predict number of transmembrane segments)
Window Size: Angle:  
FASTA formatted sequence
1:	MKHNKIITAL GLWAVSATCA YATTVGFSQV GSESGWRTSF SEAVKAEAKQ RGIDLKFADA 
61:	QQKQENQIKA VRSFIAQGVD AIIIAPVVET GWKPVLKEAK RAHIPVVIVD RNIKVDDDSL 
121:	FLTRIASDFT EEGRKIGQWL MDKTQGNCDI AELQGTVGAT AAIDRAAGFN QVIANYPNAK 
181:	IVRSQTGEFT RAKGKEVMEG FLKAQNGQPL CAVWSHNDEM ALGAVQAIKE AGLKPGKDIL 
241:	IVSVDGVPDY FKAMADGDVN ATVELSPYLG GPAFDAIDAY LKGNKDQAKL ISTTGDVFTQ 
301:	ETAAAEYEKR RQQ