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3.A.1.1.6
Cyclodextrin porter

Accession Number:Q48394
Protein Name:CymD
Length:376
Molecular Weight:42604.00
Species:Klebsiella oxytoca [571]
Location1 / Topology2 / Orientation3: Membrane1 / Multi-pass membrane protein2
Substrate Cyclodextrin

Cross database links:

Pfam: PF00005    PF03459   

Gene Ontology

GO:0043190 C:ATP-binding cassette (ABC) transporter complex
GO:0005524 F:ATP binding
GO:0016887 F:ATPase activity
GO:0016820 F:hydrolase activity, acting on acid anhydrid...
GO:0006810 P:transport

References (1)

[1] “Genetics of a novel starch utilisation pathway present in Klebsiella oxytoca.”  Fiedler G.et.al.   8594196

External Searches:

  • Search: DB with
  • BLAST ExPASy (Swiss Institute of Bioinformatics (SIB) BLAST)
  • CDD Search (Conserved Domain Database)
  • Search COGs (Clusters of Orthologous Groups of proteins)
  • 2° Structure (Network Protein Sequence Analysis)

Analyze:

Predict TMSs (Predict number of transmembrane segments)
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FASTA formatted sequence
1:	MATVSLRKIE KRYENGFKAV HGIDLEIHDG EFMVFVGPSG CAKSTTLRMI AGLEDISGGE 
61:	IYIGNRKVND LPPKDRGIAM VFQNYALYPH KTVFDNMAFG LKMQKRPKDE IKRRVEDAAE 
121:	KLEITELLYR KPKEMSGGQR QRVAVGRAIV RKPDVFLFDE PLSNLDAKLR VSMRMKIAQL 
181:	HRSLKEEGHP ATMIYVTHDQ TEALTLGDRI CVLNHGNIMQ VDTPTDLYNY PNNKFVASFI 
241:	GSPSINLIDT AIRKNNERLY VEIAPGVEIL IPHSKQVLLE GYINKPVCFG IRPEHISLAS 
301:	DDDDLNTFEG VLTVVENMGS EKFLYFIVGG KELIARVDTQ DINPFHIGKT LRFNLNTAFC 
361:	HVFDFYNENN LTNVRV