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1.I.3.1.1
The bacterial (Planctomycetes) Nuclear Pore-like Complex, B-NPC (Sagulenko et al. 2017). Several proteins were found to associate with the pore-containing membranes, and some were found to possess structural domains found in eukaryote nuclear pore complexes (Sagulenko et al. 2017).  Six proteins, shown to be associated with the B-NPC structure, are listed under this TC#.  They show sequence similarity with members of autotransport families 1 and 2 (TC#s 1.B.12 and 1.B.40) as well as members of a bacterial pore-forming toxin family (e.g., TC# 1.C.75). However these proteins have an unusual amino acid composition with lots of As, Gs, D, and Es, possibly (partially) accounting for the good scores.

Accession Number:WP_010035418.1
Protein Name:WP_010035418.1 FG-GAP repeat protein [Gemmata obscuriglobus]
Length:1707
Molecular Weight:
Species:Gemmata obscuriglobus [114]
Substrate small molecules, macromolecules

Cross database links:

External Searches:

  • Search: DB with
  • BLAST ExPASy (Swiss Institute of Bioinformatics (SIB) BLAST)
  • CDD Search (Conserved Domain Database)
  • Search COGs (Clusters of Orthologous Groups of proteins)
  • 2° Structure (Network Protein Sequence Analysis)

Analyze:

Predict TMSs (Predict number of transmembrane segments)
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FASTA formatted sequence
1:	MPNWSKQMFK SQQPTRPVHL APRLGVEALE DRSVPATVIT IQEAAGSLDG FLSATDGTIA 
61:	LNDLAGQAGT LSRAALQGVG AGVAISIAAE NAIVFDASLT APVALQTDGT ASAAFVASNG 
121:	NLAFASAKSL TTSGADLTLT STNGVLTVAN LATSGGNVTL NADAVNVLAG VQVNAGTNPT 
181:	RSIVTVQPVT NTVNVDLGGA GSAGTIGLTD AELDTITARV LRVGSLTATG TIAVTAPITL 
241:	AGGAVPTLSL RTGNNTATAV TQTAPLSVTN LAVQSAGTVV LTTPGNDVTT LAASVTGAGN 
301:	AFRFTDTNAL VLGTVDGVAG AATTTAPGSQ VTLSAGALTQ AAGANVTTSE LELLGAGPVT 
361:	LTNAGNNVAT LAASVAGALS YTDADALTVG IVGGTSGVAT TNSAIVIATT DGDLSITNGN 
421:	AGPTPDVNAG TGTVSLTAGG AAGQNRLLAV AIDAGVTGTG GVTLTANDVE IEADVDAGAQ 
481:	LLLVQPFEAS TPINLGTNTV GAFALTDAEI DFLITTGAVR IGNAAAGNID VSAAITVDGA 
541:	SQLELITGGG VMDNNSGAQD ISVARLAITA GTGIGVVGTN TPNLELSVTN LEATTATGGI 
601:	GISNFGELVI GGVTGALSGL SVTTSGAIAI TVTGSLTVGA TPTEGVSVAG GGNITLTPSN 
661:	DLAINAPVIA SGGNGNITLS ARNDITVDAT VTVAGTGNIT AGADSDNNGG GNFSNTAALT 
721:	TAGGDITISA QDIELNAAAT TTTAASGDIF LLTRDPADVI NLGTNTGFGL TNADLNNVTT 
781:	ATLHIGSATN TGGIAVTGQI TLGGAVPVLS LETSGAITDA TGAEQTDITV ASLTLLAGRA 
841:	GAGGIGATGV GGLDVAVTNL AAANSSPDTG EIVIANASAA LNVGTVAGRA GVVNQNTAGG 
901:	VVLSSTGGIA LAATVSGATG VAVSTSGGDL NTTAPVSSST GAVQLTASGA VSIGGAVSGT 
961:	GATVTAGTTL TTTAAATVTV GGAGSVALTA SAGALSVGAS VAAGIGGVTL TATDTAATTN 
1021:	TVTVAAGVSV STTAATLTIN AGDAVTIGGT LTTVAGGTVN VNVDAGAVDV GVGGAVTFSA 
1081:	TSNVSGATVM NVTGGADDDT FNLRPLTTGI TTNLIAAAGA DTLNIDLTAA TASAFGNITA 
1141:	VGTGTFSFGN RGSVVATGLE SVAATGGTYA LNIGLQTAGF QDGNASPDVT TVSNTGSALN 
1201:	VTVQANSTGA TQTLFSGRTG DVSTLTVTGS TDRDTVTVDL TNPLPAVTVV GGGPTTIPGD 
1261:	TLNLITTNAN GATFTPVVGG GTYTFANRSA VTFSQIEVGP APVLRVAASD ASAAEGATPD 
1321:	TGTFTITRVG DTSAALTVTY TLSGTAVNGV SYQALTGTVT FAPGASTATV TLTPIDNSSV 
1381:	DGTRTAVLTL SPSASYEIAA GASQATIAIA DNDALGRRLV VGSSASGTVQ VLDNSSNTAV 
1441:	ASFRPYAGYQ GGVSVAVGDV TGDGVADIVT GATALSPHVK VFDGVTFKEI RSFFAFTNFA 
1501:	SGVSVAVGDL DNDGKSEIIV GAGTLAPHVK VFDATTLQER ASFYAFTLTT GAPIASGITV 
1561:	AAGDTDGDGR AEIVVGATVA PHVKTFDLAG NTLRSFLVPN LPPDTGISVG TGDLDGDKRA 
1621:	ELLVGARVGG QAVTTVFQGE AAIGQFSSGA VATTPRVAGT DRDGDGKDEL ILTLGPTVSV 
1681:	RSGTFPFDQL STLTPFTGFN GGVFVG