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1.I.3.1.1
The bacterial (Planctomycetes) Nuclear Pore-like Complex, B-NPC (Sagulenko et al. 2017). Several proteins were found to associate with the pore-containing membranes, and some were found to possess structural domains found in eukaryote nuclear pore complexes (Sagulenko et al. 2017).  Six proteins, shown to be associated with the B-NPC structure, are listed under this TC#.  They show sequence similarity with members of autotransport families 1 and 2 (TC#s 1.B.12 and 1.B.40) as well as members of a bacterial pore-forming toxin family (e.g., TC# 1.C.75). However these proteins have an unusual amino acid composition with lots of As, Gs, D, and Es, possibly (partially) accounting for the good scores.

Accession Number:WP_010044253.1
Protein Name:WP_010044253.1 hypothetical protein [Gemmata obscuriglobus]
Length:975
Molecular Weight:
Species:Gemmata obscuriglobus [114]
Substrate small molecules, macromolecules

Cross database links:

External Searches:

  • Search: DB with
  • BLAST ExPASy (Swiss Institute of Bioinformatics (SIB) BLAST)
  • CDD Search (Conserved Domain Database)
  • Search COGs (Clusters of Orthologous Groups of proteins)
  • 2° Structure (Network Protein Sequence Analysis)

Analyze:

Predict TMSs (Predict number of transmembrane segments)
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FASTA formatted sequence
1:	MRHTLRTPNV VRLNCESLED RTTPATAFAL SGTSLLSFDT AAPTVTQTTA ITGVTGSETL 
61:	VGIDFRPQNG LLYGLGVNAA ADTATLYAIS TRTGVATAVG TAGSIAFTTD GTTVVDLPDP 
121:	ATVGYGFDFN PAADRVRVVA GSLNFRADPN TGAGVDTDNN AGNGINPDGP VNTGTTSVDA 
181:	AGYTNNQPNN GSITTLYTLD ATSNSLFIQN PPNAGTQVSV QTITLGGSTL DFTAVNGFDI 
241:	PAGVNAPSSN AAVTAGSAFA VLNDGSTTGL YSIDLVNGQA TLIGNVGTGA TAVQGLAIQS 
301:	DQGGFPAIAL SDDGASLLRF NTASPGTVTT QAISTGSLAA NEVLVGIDFR PATGQLYGLG 
361:	VNATADTATL YLIDPQTGAL TAVGTPSSIT FSGVDLPPAT AGYGLDFNPT VDRLRVTTGS 
421:	GLNFRVNPNT GAPAAATVDG AIIGLPAGST GVSATAYTNS FGQPLSGGVT TQYTLDAASD 
481:	SLFIQNPPNN GTQTARIPIT VGGAPIDFTD VNGFDIPAGV RVGTSNTAVT SGTGYAALTV 
541:	NGVTRLYAIN LVTGEATSLG SVGAGATALA GLTLAAAPAG TISFGLTTFS ATEGGAAVVT 
601:	LFRSGGSSGE VTVTVTVTGG TATAGTDFAS GPYTVTFPDG ATAATLTIPF TDDTLAEGLE 
661:	TVTLALSAPT GGAVLGALTT ATLSVNDNDT AGAGSVAAGP VVVITRADGT STTVTPFAGF 
721:	QGRVTTASGD VNGDGVNDVV VGAGVNGHVK VLDGSTGAEV RSFFPFAGFT GGVYVAAGDI 
781:	NNDGFDDVIV GATINGHVKV FDGKTGAEVR SFLAYPGFPG EVRVSSGDIN NDGFDDIITG 
841:	AGANGHVKVF SGATGAEIRS FLAFPGFTGG VNVASGDVDK DGTDDLVVGA DANGHVRVFS 
901:	GATGAEIRSF LAFPGFAGAA RVGARDVNGD GAADLFVGAG PGGSGRLRTF NGVTLALLSE 
961:	VALSDPLNLG VFVG