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1.I.3.1.1
The bacterial (Planctomycetes) Nuclear Pore-like Complex, B-NPC (Sagulenko et al. 2017). Several proteins were found to associate with the pore-containing membranes, and some were found to possess structural domains found in eukaryote nuclear pore complexes (Sagulenko et al. 2017).  Six proteins, shown to be associated with the B-NPC structure, are listed under this TC#.  They show sequence similarity with members of autotransport families 1 and 2 (TC#s 1.B.12 and 1.B.40) as well as members of a bacterial pore-forming toxin family (e.g., TC# 1.C.75). However these proteins have an unusual amino acid composition with lots of As, Gs, D, and Es, possibly (partially) accounting for the good scores.

Accession Number:WP_010044366.1
Protein Name:WP_010044366.1 hypothetical protein [Gemmata obscuriglobus]
Length:2559
Molecular Weight:
Species:Gemmata obscuriglobus [114]
Substrate small molecules, macromolecules

Cross database links:

External Searches:

  • Search: DB with
  • BLAST ExPASy (Swiss Institute of Bioinformatics (SIB) BLAST)
  • CDD Search (Conserved Domain Database)
  • Search COGs (Clusters of Orthologous Groups of proteins)
  • 2° Structure (Network Protein Sequence Analysis)

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Predict TMSs (Predict number of transmembrane segments)
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FASTA formatted sequence
1:	MLPSWLRQLF RNKFTGHGTV APFQNALTLE ALENRAMPAI ITWTGGAVPD FDFNGSGTTN 
61:	VGPVDANGAP VNPNDVGESG DLSWSNPLNW DLGVPTSGDD VVFETAAFYG GTLPRSANYF 
121:	KYYTTDRFVP TPNSVMDLTQ TVRSITIKDA GWLIVDQVVD EPLFPQGNAP TNLGTLTVTD 
181:	GITYLGAGSS TLYFRMQLSN EAQNFTATNA AGTLNIIGNI GTSPAAANPS QVGFIKLGDG 
241:	TISLGGRNPV TGAAGGNNTF AGLVEVQQGV LLANSNNALG LTAVGTNVLN GATLRVNVSN 
301:	FRESLTIQGT GVGGQGALFG GDGVDPLTGG TVLNGVTLNP SATVGGRLTI SGVVSGSGNL 
361:	TTIGTITLTT ANTYGGVTFV NAGSLAISND DALSPGSYTV VSSGATLALL SNPVSGARVI 
421:	DDELLILNGT GLADTGNNNQ PLGALFAQGA NRTTPAEWRS AIFLEGNATI GVFDGGALLV 
481:	SGHLANLPAS AAATALLTPT EALSLQAYRA LNRPVVANAS LSKWGKGTVI FPNPNLEFSG 
541:	NTFVNNGVLV MQGPNVLGPA TRTTAPRGGA ITVNSDITNQ SFGTLELQGQ YTLQKNLTLN 
601:	GPGYTGGALS ITDNAATPAV HTVIDVAGTV TIASTTTISN DPNTDLTISG VIGGAAGQNL 
661:	TKVGTGTVSI TNTNTFLGAL TLRNGVTTVT RGGGFGGTGG AGTTVASGAA LVLASGITVQ 
721:	NEALTLTSAA GSSAALQVSS GTNVWTGTVS VIGNNQIGPG DEAIINVTGA TGSLEFSNVV 
781:	SGDAKIRKLG AGELKLTGTA SNTFVDTLQI EQGTVSLKKI APVGTTVNAV AGAIIVGDGQ 
841:	GGNNADVLRL DAPNQIPDTR AITVNSSGLF DLNGSNETVG PLALQGGEVT TGAGSLILTT 
901:	NVATFGSSEM SRITGNVFLG STTRTFTFLP GAATTFSANR NPAQAGGTVT LTFTVTGNPG 
961:	DPVPTGTVSF FDGNIFLGTA TVLAGTATFT VQANVLTVGA HTITAVYTGD ANYAPSTVPL 
1021:	DQSLVIVNPS ERAVLTSSAS PALAGQVITF TFNLPPRAGE AVPTGTVQFF DGPNPIGAPV 
1081:	ALSALGTATY MTTLPVGSHQ ITAAYSGDGT YSPVQVTLAN QQVGTPAQLV LRSSGNPVAP 
1141:	GSPVTFTFIA SGDSSAPTPG GSVQFFDNGV AIGAPVALDA NGVATLTTSA LTVGTHTITA 
1201:	AYTGDANVYL PGVVPLAPTL VVGGTPLLTV ISGANQAIAA SAVPLTFIAT GRAGDPVPTG 
1261:	TVQFFDNGVG IGAPVALVNG QATISPTTLG VGSRTITAVY SGDNFYAGGT GRLTANQTII 
1321:	AAPTPAAGTI AGIVSSSSNS VTSNGNVTFT FTAIPPSGGV IPNGTVQFFD GTTPIGAPVA 
1381:	LNTVGNNGVA SVTTSGLTPG THTIRAQYFG GNYTANTYTL TPAQVVVNPY IIQVSSSNNP 
1441:	AGVTENVTFT ANFITLPGAP ALTGTVSFYD NGVQIGTIQN VVGGSASVTT PNLTPGTHTI 
1501:	TVRYFGSGGL TPTYAPTVTD VPLAPSQVVG VPPIMLLTSN LNPAPPGSLV TLTFVASGKA 
1561:	GDPVPAGSVQ FFDNGVPIGG TVPLNAGSAT RDVSFTPGTH TITAQFIPEN GNTNYTSGVA 
1621:	TLVPSQVVTT PAAIQLTADN NPTATGANVT FTYRLTPGTN DPVPTGTVQF FDGATPISGQ 
1681:	VILVNGVATL TTNTLTIGTH TITAVFTSGD SNYQSNQATF NNLVVSNPPL PPLAPPPTIV 
1741:	GAAQPTLQMN AVMSGAAGAG VIKTGSGQLV LNAVNTYTGT TTVNGLNGAI VVGVNNALPD 
1801:	TGVVVTTGTL TVNPGVSDQV ASLTGAGTLD LGAGGNLATG VSNGNDTFAG PITGSGTLTK 
1861:	VGAGTLTLTG NSPAYTGSSV VAGGTLLVTA NQSSASVVVQ GGATLGGTGT VGAVTVNPGG 
1921:	VLAPGTSPGI LNSTGNLTFS AGSTFLVEVN GTTVGTQYDR YVTTGTANLN GATLGFNLGF 
1981:	TPTLGDSFTI LTAAGGVSGA FNGLPDQGTF TLNNRVYQVS YLATSVVVTQ VANATTTSLV 
2041:	SNNNPSLPGS AVTFTFTITP TAGADPMPLG TVQFQDNGVN IGAPVTLTAG SGNSAVAVLT 
2101:	TSALVNGSHT ITAVYTPQTV PTASPYLTAT AAIVQAVTVP STTTLTALQG PVVFGSVTSF 
2161:	LAGVGEQSGL QTPTGTFTFT NSATGAVLGV VALDATGRAV FSTAALPPGT ATVTVTYSGD 
2221:	SFYRASTATV TQVVDRQNRV VVGSDAGPVA TVQVFDSTTG ALVGTFQPFD QYTGGVKVAT 
2281:	GDVNNDGVAD IVVSAGAGAP GGHVKVYDGV SFGLLSSFFT FLGYNGGVNV AVGDVDGDGF 
2341:	GDVVIGTAAS NDHVKAFSGR SLLNGGIAAN GTADPSTILS FFAYGGGNPV GVTVAAGDVD 
2401:	GDGRADVITG SATFAGHVKA FSASGQQIGS YFAYGAGYLG GIYVAAGDLD GDGRAEIVTG 
2461:	ATNAPHVKAL RLDGSEVASF FAYTNGNGSP APFGVRVAVA DRNGDRLADI LTGSAGGAPH 
2521:	VKAFSGLDPS LLLDSFIAIP PGQAPSTSGV FVGGSAPK