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1.I.3.1.1
The bacterial (Planctomycetes) Nuclear Pore-like Complex, B-NPC (Sagulenko et al. 2017). Several proteins were found to associate with the pore-containing membranes, and some were found to possess structural domains found in eukaryote nuclear pore complexes (Sagulenko et al. 2017).  Six proteins, shown to be associated with the B-NPC structure, are listed under this TC#.  They show sequence similarity with members of autotransport families 1 and 2 (TC#s 1.B.12 and 1.B.40) as well as members of a bacterial pore-forming toxin family (e.g., TC# 1.C.75). However these proteins have an unusual amino acid composition with lots of As, Gs, D, and Es, possibly (partially) accounting for the good scores.

Accession Number:WP_029601055.1
Protein Name:WP_029601055.1 hypothetical protein [Gemmata obscuriglobus]
Length:914
Molecular Weight:
Species:Gemmata obscuriglobus [114]
Number of TMSs:5
Substrate small molecules, macromolecules

Cross database links:

External Searches:

  • Search: DB with
  • BLAST ExPASy (Swiss Institute of Bioinformatics (SIB) BLAST)
  • CDD Search (Conserved Domain Database)
  • Search COGs (Clusters of Orthologous Groups of proteins)
  • 2° Structure (Network Protein Sequence Analysis)

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Predict TMSs (Predict number of transmembrane segments)
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FASTA formatted sequence
1:	MTSGFTATNN NYRILADAFT DPASPNFVSP GDTVILSGNF DWTEPNAAAA WALGNDGLAD 
61:	TGDEYAITIN DGLDNVTVTA ASLGSAVIQG PGDLPDFDLE GAFYFPGGAG TNTGWTFSNL 
121:	TLLDFDLGIG MYGDPSGAGA GAYSGTTITN NRIRIATDLS TAAAPADVSQ NIGINFSFGT 
181:	GQTISNNLIE IPGDVAGSTA NSSTVGIQSE TFFPGTYEGL RITGNTIRVL NAAAVANPQR 
241:	IVGIWENGHS HGSNITVSGN QFLNAAGVNP AANLQQAFVI TSHSGPDGVV TYAGNTVTGA 
301:	NVGLAWLSPV EFPGYDFSSN GPVLVLGNTL TNVQTGILIQ SKGVAQLGGG NVITGTATGT 
361:	GVSIQAGSVA TIFNGSFTGT GVGIDVNGGT ALIQGADLNN NAIAGLRVQT VTIPQGEEIP 
421:	PLVFVGLADA GGGGTALGTS TGGNNFANYL PTGAARAIIN LNAAGAGANT SARNNTFASD 
481:	SLAFIEQVVD HSVDVATRGT VDFSSPAAAG NVAPAVANQT FELPIGSPAG ALVGQVVASD 
541:	ANSNPLAYSI TDGNTGGAFA IDAATGRLTV AVPAALGTGT FNLTVQVSDG LTVSTATVTV 
601:	TLFDSTGGAN DPGPAATPVY LTAVGADAGA NGHVKVYNQD GSLRFSFFAF DGFNGGVRVA 
661:	TGDVNGDQVE DIVVGAGAGA AGGHVKVFDG ATGALISSFF SFSGFTGGVN VAVGDVDGDG 
721:	RGDIVVGTGS GAAHVKAFSF ANNTLLSSFI AFDGSTGGVT VAAGNYDGTG ADEIVVGSAT 
781:	GPAHVKAFTR TGSTVLSFIA FSGFNGGVNV AAGDLNADGF AELVVGTGPG VNGQVKVFQR 
841:	TTVATGGATI ATIPGTGGAR VALGRLNSDA VPDILVGPGP GSNALVRTFD GSNFTALSAI 
901:	AAFDGFLGGV FVG