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1.A.1.5.24
Cyclic nucleotide-gated Na+ channel of 764 aas and 6 putative TMSs, CNGC20.  Induced in shoots in response to salt (NaCl) stress (Kugler et al. 2009).

Accession Number:Q9LD37
Protein Name:Probable cyclic nucleotide-gated ion channel 20, chloroplastic
Length:764
Molecular Weight:86950.00
Species:Arabidopsis thaliana (Mouse-ear cress) [3702]
Number of TMSs:5
Location1 / Topology2 / Orientation3: Plastid1 / Multi-pass membrane protein2
Substrate Na+

Cross database links:

External Searches:

  • Search: DB with
  • BLAST ExPASy (Swiss Institute of Bioinformatics (SIB) BLAST)
  • CDD Search (Conserved Domain Database)
  • Search COGs (Clusters of Orthologous Groups of proteins)
  • 2° Structure (Network Protein Sequence Analysis)

Analyze:

Predict TMSs (Predict number of transmembrane segments)
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FASTA formatted sequence
1:	MASHNENDDI PMLPISDPSS RTRARAFTSR SRSVSLSNPT SSIEGFDTST VVLGYTGPLR 
61:	TQRRPPLVQM SGPLTSTRKH EPLFLPHPSS DSVGVSSQPE RYPSFAALEH KNSSEDEFVL 
121:	KHANLLRSGQ LGMCNDPYCT TCPSYYNRKA AQIPTSRVSA LFDSTFHNAL YDDAKGWARR 
181:	FASSVNRYLP GIMNPHAKEV QTWTKFFALS CLLAIFIDPL FFFLIKVQEQ NKCIMIDWPM 
241:	TKAFVAVRSV TDVIFTMNIL LQFRLAYVAR ESTVVGAGQL VSHPKKIALH YLKGKFFLDL 
301:	FIVMPLPQIL ILWIIPAHLG ASGANYAKNL LRAAVLFQYI PKLYRLLPFL AGQTPTGFIF 
361:	ESAWANFVIN LLTFMLAGHV VGSCWYLFGL QRVNQCLRNA CGNFGRECQD LIDCGNGNSS 
421:	VLVRATWKDN ASANACFQED GFPYGIYLKA VNLTNHSNLF TRYSYSLFWG FQQISTLAGN 
481:	QVPSYFLGEV FFTMGIIGLG LLLFALLIGN MQNFLQALGK RNLEMTLRRR DVEQWMSHRR 
541:	LPDGIRRRVR EAERFNWAAT RGVNEELLFE NMPDDLQRDI RRHLFKFLKK VRIFSLMDEP 
601:	ILDAIRERLK QRTYIGSSTV LHRGGLVEKM VFIVRGEMES IGEDGSVLPL YEGDVCGEEL 
661:	LTWCLERSSV NPDGTRIRMP SKGLLSSRNV RCVTNVEAFS LSVADLEDVT SLFSRFLRSH 
721:	RVQGAIRYDS PYWRLRAARQ IQVAWRYRRR RLHRLCTPQS SYSL