TCDB is operated by the Saier Lab Bioinformatics Group
« See all members of the family


1.A.23.4.8
Mechanosensitive ion channel protein 5 (Mechanosensitive channel of small conductance-like 5) (MscS-Like protein 5)

Accession Number:Q9LH74
Protein Name:Mechanosensitive ion channel protein 5
Length:881
Molecular Weight:100366.00
Species:Arabidopsis thaliana (Mouse-ear cress) [3702]
Number of TMSs:5
Location1 / Topology2 / Orientation3: Membrane1 / Multi-pass membrane protein2
Substrate ions

Cross database links:

Genevestigator: Q9LH74
eggNOG: COG0668
HEGENOM: HOG000239334
Entrez Gene ID: 820710   
Pfam: PF00924   
KEGG: ath:AT3G14810   

Gene Ontology

GO:0016021 C:integral to membrane
GO:0005216 F:ion channel activity

References (2)

[1] “Structural analysis of Arabidopsis thaliana chromosome 3. II. Sequence features of the 4,251,695 bp regions covered by 90 P1, TAC and BAC clones.”  Kaneko T.et.al.   10907853
[2] “Two families of mechanosensitive channel proteins.”  Pivetti C.D.et.al.   12626684

External Searches:

  • Search: DB with
  • BLAST ExPASy (Swiss Institute of Bioinformatics (SIB) BLAST)
  • CDD Search (Conserved Domain Database)
  • Search COGs (Clusters of Orthologous Groups of proteins)
  • 2° Structure (Network Protein Sequence Analysis)

Analyze:

Predict TMSs (Predict number of transmembrane segments)
Window Size: Angle:  
Window Size: Angle:  
FASTA formatted sequence
1:	MAAVDSTDRR DFIVNINGQE SGAVGATGSS SNAEGGNIWK ESSYDFWDGE KGKNDKKGDD 
61:	EDEDGGSFHF RQRGERRHSS AELSDPPSKL IGQFLHKQRA SGDEISLDVE LNMAELQSNT 
121:	PPRPATASNT PRRGLTTISE SSSPVKTKVK ADAVRRRQNR TSLGGSSDEE GRNRDEAEVL 
181:	KCGSKKPMLS RNKTKSRLQD PPTPTHPAID KTEMKSGRRS GIFKSGFLGK SPKAGTPGRN 
241:	GFEEEEEEDP FLDEDLPEEF KRDKLSFWVF LEWISLVLIV TSLVCSLTIH NLQRKTWWKL 
301:	DLWKWEVTVL VLICGRLVSS WIVRIIVFLV EKNFTWRKRV LYFVYGVRKS VQNCLWLGLV 
361:	LLAWHFLFDK KVERETRSTA LRYVTRVLVC LLVALIIWLV KTILVKVLAS SFHMSTYFDR 
421:	IQESLFTQYV IETLSGPPLM EIQRMEEEEQ QVAEDVKSLE KLAGAKLPPA LKATVKSFMK 
481:	VGKSPGLNRI GSKRGEDGEG IRIDQLKRMN TKNVSAWNMK RLMNIILKGA ISTLDQNMQD 
541:	TTQEDEDATH IRSEYEAKCA ARKIFHNVTE PGSRYIYLED FLRFLCEEEA ERAMALFEGA 
601:	SESDKISKSC LKNWVVKAFR ERRALALTLN DTKTAVDRLH RIINVVIGII IIIIWLLILG 
661:	IATTRFLLVL SSQLLLVAFV FGNSCKTIFE AIIFLFVMHP FDVGDRCEID GVQLVVEEMN 
721:	ILTTVFLRYD NQKIIYPNSV LGTKPIANYY RSPDMGDAVE FCVHIATPPE KITAIKQRIL 
781:	SYVDNKKDYW YPAPMIVFLS MDDLNSVKIA VWLTHRMNHQ DMGERYIRRG LLLEEVGKTC 
841:	RELDIEYRLY PLNINVRSLP PTANPTSSDR IPPSWMQQRG P