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1.A.23.6.1
Chloroplast mechanosensitive channel, Msc1 (anions are preferred over cations) (Nakayama et al., 2007).

Accession Number:A3KE12
Protein Name:Msc1
Length:522
Molecular Weight:56255.00
Species:Chlamydomonas reinhardtii GN=MSC1 PE=2 SV=1 [3055]
Number of TMSs:6
Location1 / Topology2 / Orientation3: Nucleus1
Substrate ions

Cross database links:

Pfam: PF00924   

Gene Ontology

GO:0016020 C:membrane
GO:0055085 P:transmembrane transport

External Searches:

  • Search: DB with
  • BLAST ExPASy (Swiss Institute of Bioinformatics (SIB) BLAST)
  • CDD Search (Conserved Domain Database)
  • Search COGs (Clusters of Orthologous Groups of proteins)
  • 2° Structure (Network Protein Sequence Analysis)

Analyze:

Predict TMSs (Predict number of transmembrane segments)
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FASTA formatted sequence
1:	MIMSSTINLS GRRQATSVRQ PGHSALSCAA MPRFVGERLR SREAPTAARR RTVTCAAHKG 
61:	AAAAAVAATA TATVSAPPPG PPGRAPPTQD PSVILHLLTS PFISMLGGES SWQYYLFSRV 
121:	THEVVAVALL AVFAYWLLTK MAHGSAQAME KHRDTAGSAG GGEFLRLAAD ALTGAQAKLF 
181:	FSVVLFVNVA RNSLYIMDGF ITKFNPKLPN DWLDDLIRLA VDCLAPLDNV LMKLSLIGTA 
241:	LFGCAVCLRW KDVLVAYGVK TYLEQLDKGQ ELVQNFINPA SNLLNWVIIV LSALWLAVAL 
301:	GFNLKPLLAV GGASGIIIGL ATQQVLGNFV SGLNIFLSRP FVAGEFISLV SQTLSSQTNI 
361:	SGRVIRIDPM RTLIATEDGA TVTVPNQIIA VSIVVNRSRS PHWTVSTASP LLANTRELRW 
421:	RMKLPHAALE RIEELEAKID AALNAALPQA QVRYSPPDLH LVKFNEGGAE IAAKVNLVWR 
481:	LREGGATKEL VEKQQTQEML VQTALLALQK VVRSCDGAFI TV