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1.A.4.1.13
Transient receptor potential ion channel protein, TRP6, OF 2341 aas and 6 - 9 TMSs.

Accession Number:A8JCM1
Protein Name:Transient receptor potential ion channel protein
Length:2341
Molecular Weight:242072.00
Species:Chlamydomonas reinhardtii [3055]
Number of TMSs:6
Substrate Ca2+

Cross database links:

External Searches:

  • Search: DB with
  • BLAST ExPASy (Swiss Institute of Bioinformatics (SIB) BLAST)
  • CDD Search (Conserved Domain Database)
  • Search COGs (Clusters of Orthologous Groups of proteins)
  • 2° Structure (Network Protein Sequence Analysis)

Analyze:

Predict TMSs (Predict number of transmembrane segments)
Window Size: Angle:  
Window Size: Angle:  
FASTA formatted sequence
1:	MLPGQISGPE SGGNGSSAGT RPTGDGIAVA VGVGSSTERP ATPFMSGPSA HLPPPPLASL 
61:	AMPPPPILRV SLAGGMAGST SGGGSPAAPA ALGAGSGGGG NSSPSGRGFA PSPSGRGFLM 
121:	PGPSGRVSHA GVGNSPSGLG LAASPSGGWT SSANGVGVIG AGGMGGRISN GGNGLGIGAT 
181:	EAAVAPVVMA TAEAVEALGG AGAGDVSAAT PSSMTGVTPL LSRGRGWPAG DDRIAGALPQ 
241:	TTEGLGIGND ASSSGIPSPA PSTGGGPGVG GGAISGRHWI SGAAARLSTG SGGGTSAGWL 
301:	GGASVASATG NELPSGSSID ISSMARLDSD VGPPEARGMD PPTPSALAAA APSSAAPALT 
361:	QLPFPSAGLI VTAAMAAAGV SQSGDSAVTL ARQLGVGGHE EDGAAVAPSA DSTTALLGME 
421:	ASTIARHLGI AAAAGQRPMT SPTALFGEAS PASLPMPSAA RAASAAGPPQ GLEYQTILRI 
481:	HQRAILCGAV RNGGEDGYVL WDLGRGRPLL MSLEESGPWA AASAAATPPP FGPAPPPPAA 
541:	AAATLDNDLE RRSSVNVAVP SAAPTRPPPT NMAAFKQYLS LRRPGVPTTA AAAAADTDSD 
601:	TDDENADDPL RRARKAARLA AAGAYADAAT AAGALPNGKS PPQAANMLKE RTMQRPGGAK 
661:	AGRPGFGANG PPSAGLPGML HSSGEESGGE GGEEDGAAAA WQGASYRNMI TAVAFVSDYS 
721:	WATCHPGGAI RVWRANTHSG PTRGNVWDGG KRDYTSAFLE RTLTGHTGYI NNIASYCGEA 
781:	YGDVFEHGET LRLEGGRLAV TTGLDTTARS WDLTEGRQIA CFTEHENEVT AVAVMDSGKM 
841:	ALTTAEVVPE VASAMLWDPK TGKLFHTLVG HHGWLHGVAL SERRKIAVAV GEHATLFIWN 
901:	TETGNLLLSK RVASDGVQRW ASINSDGNFL CFGSAEGVVR VVETYYGCEL ARFDSTWVDN 
961:	EFHSISACFF CDDELHDDPE HWNNKFLSLK SDGQDVSTAH VVGAVAGPVV TMCDVPILSN 
1021:	GQLGTDSSAA IGRAAAAGAM SDDGHSDFDD ELLIDEDDPD LLPDTEPTAN GAGGGDRAAA 
1081:	LARARQSGGG APPNAASAAS TSMFTFGNLR SRIGGGTGDS ASNNTSNGAE PSSPGAGNYK 
1141:	SMGLKASLER VNTANKVKRL PATQPKAKEP AAGGKAARFA LPADADDEPS QPSVDGANSN 
1201:	GGGSDADTLA TAASPLSRTR FAPNAALPSA NSDSDKDAGA KRASSVAPSP PGAASNGLLG 
1261:	PPSTLPSVAA HLPSQPMRPF AKINDATELE MSPFGRRIVS LSGDGTVRVW SLLGVSVRRE 
1321:	LPRHPEMVNE VAISRDRSLV VTVTENEGCL RAFSLSTGHL VTTVPAHVSY DPYTRDYELE 
1381:	GTAVTCSDDT TIKIWDLSKK GGPACVRILY GHAGGVTGVC WVPGSSRVLS VGEDRSVLEW 
1441:	EAGPAGGSAP VARMDHVHED AIIAVVTSHD GRRALTCSMD RTARLVIHGA FSPDGRHIVT 
1501:	CGADCTVRVW DADNGKQLMC FEGHSRTVTR CLYLNSYVVA TASRDGTIRC WDVQRKRRLP 
1561:	SVAPPFALEA DSFEAMVLLP SQRCGYGFPE VLASLTSGRV VVYDPTYRQP LPEQLLLQLN 
1621:	PDLELLGPPD DLVVDFPGLL VMPIRDGNTM LHMAAMSGDF VLLRALLAGI AGSAAAGGSG 
1681:	GGPSRSQAND AAAANGYGYY GFAPPLPLNF VGQTPLDLAA WNMLAEEMPT LLVTFLKALS 
1741:	LDPVTGLEED VLFAPMRAAD EVMTQGAEDL AAADLWLDHV NQLREDLERL PWYAHVWPLR 
1801:	HWMRDYREKP TRPSIAGLPY VALSARNMEH SPLGVLVQHG LSQALASDVM YAVLFYKWES 
1861:	FARTIFMKES LVFIAFLALY LVASTMSVLQ SPHVRFEELY DMSRWQNIIR VVLEAVVALM 
1921:	ALHDIYGEVT EVVNAGWYMY LTGSQGSWNG IEMSSCIGIL LAFGLQLGSF EGGSRFMMSL 
1981:	TTILLGLRLL KVASGPEHTG VFVQALLRIV ANLRFFILIL VVLVLTFSFA FWQIMSIDLP 
2041:	QNEDHRDGQD FDTLGNTIVQ AYALGVIGQM DGNIGQDFAW RPWVQVLALT YTFLVTVILL 
2101:	NLLVAVMSDT YSVVKEHARS EWLLLRAKLI LEIESSLPDG FFKDTQRSCP RWLHCLKVDS 
2161:	SGGRRGDESL IESMRGPIAR NVLNTDLKQT ESRLVDELHD VRDTLRLLHA DVGTLRTALA 
2221:	AGGVSLPVGG ASANPIYAPL GVGGTSQRFG SSTVGGGGGG GTLAGLFGGG PAGGNGPGSA 
2281:	AMPAWSSSGG VGSAAVGFNA RLQSPPVVRL TSLSSERGLR IGSTSTSRHS LFDRDSRKHL 
2341:	Y