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1.A.70.1.1
Channel-forming molecule against Microbes A (MamA) (81aas; 1TMS; n-terminal inside) (Fedders et al., 2008)

Accession Number:B1PVV5
Protein Name:MamA
Length:81
Molecular Weight:9234.00
Species:Ciona intestinalis GN=mamA PE=4 SV=1 [7719]
Number of TMSs:1
Location1 / Topology2 / Orientation3: Virion membrane1 / Single-pass type I membrane protein2
Substrate small molecules

Cross database links:

RefSeq: NP_001119701.1   
Entrez Gene ID: 100145819   
KEGG: cin:100145819   

References (1)

[1] “An exceptional salt-tolerant antimicrobial peptide derived from a novel gene family of haemocytes of the marine invertebrate Ciona intestinalis.”  Fedders H.et.al.   18598239

External Searches:

  • Search: DB with
  • BLAST ExPASy (Swiss Institute of Bioinformatics (SIB) BLAST)
  • CDD Search (Conserved Domain Database)
  • Search COGs (Clusters of Orthologous Groups of proteins)
  • 2° Structure (Network Protein Sequence Analysis)

Analyze:

Predict TMSs (Predict number of transmembrane segments)
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FASTA formatted sequence
1:	MDRKIVFALL LLVSLNVSTV YGWSSLGRSL LRLTHALKPL ARRSGWDQRA ASLNFAPEIE 
61:	DELEASEMDR IMQQMADEKQ D