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1.A.8.10.12
Aquaporin SIP2-1 (OsSIP2;1) (Small basic intrinsic protein 2-1)

Accession Number:Q10M80
Protein Name:Aquaporin SIP2-1
Length:250
Molecular Weight:26849.00
Species:Oryza sativa subsp. japonica (Rice) [39947]
Number of TMSs:6
Location1 / Topology2 / Orientation3: Membrane1 / Multi-pass membrane protein2
Substrate water

Cross database links:

eggNOG: NOG276352
HEGENOM: HOG000240015
Entrez Gene ID: 4332667   
Pfam: PF00230   
KEGG: osa:4332667   

Gene Ontology

GO:0016021 C:integral to membrane
GO:0005215 F:transporter activity

References (5)

[1] “Sequence, annotation, and analysis of synteny between rice chromosome 3 and diverged grass species.”  Buell C.R.et.al.   16109971
[2] “The map-based sequence of the rice genome.”  International rice genome sequencing project (IRGSP)et.al.   16100779
[3] “The rice annotation project database (RAP-DB): 2008 update.”  The rice annotation project (RAP)et.al.   18089549
[4] “Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.”  The rice full-length cDNA consortiumet.al.   12869764
[5] “Identification of 33 rice aquaporin genes and analysis of their expression and function.”  Sakurai J.et.al.   16033806

External Searches:

  • Search: DB with
  • BLAST ExPASy (Swiss Institute of Bioinformatics (SIB) BLAST)
  • CDD Search (Conserved Domain Database)
  • Search COGs (Clusters of Orthologous Groups of proteins)
  • 2° Structure (Network Protein Sequence Analysis)

Analyze:

Predict TMSs (Predict number of transmembrane segments)
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FASTA formatted sequence
1:	MSPAPPPSRG RIRPWLVVGD LVVAAMWVCA GALVKLAVYG VLGLGGRPEA DAVKVALSLV 
61:	YMFFFAWLEG FTGGASYNPL TVLAGALASR AGPSLYLFAA FVRMPAQVFG SILGVKLIRA 
121:	ALPKVGKGAP LSVGVHHGAL AEGLATFMVV IVSVTLKKKE MKGFFMKTWI SSIWKMTFHL 
181:	LSSDITGGVM NPASAFAWAY ARGDHTTFDH LLVYWLAPLQ ATLLGVWVVT LLTKPKKIEE 
241:	EADESKTKKE