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1.B.22.4.3
HofQ competence protein, the outer membrane DNA translocase (Tarry et al., 2011). The 2.3Å structures of the extramembraneous domains are known (Tarry et al., 2011).

Accession Number:C6ALC5
Protein Name:Protein transport protein HofQ
Length:474
Molecular Weight:52241.00
Species:Aggregatibacter aphrophilus (strain NJ8700) [634176]
Number of TMSs:1
Location1 / Topology2 / Orientation3: Cell outer membrane1
Substrate proteins

Cross database links:

Entrez Gene ID: 8123336   
Pfam: PF00263    PF03958   
KEGG: aap:NT05HA_2231   

Gene Ontology

GO:0009279 C:cell outer membrane
GO:0009297 P:pilus assembly
GO:0009306 P:protein secretion

References (1)

[1] “Complete genome sequence of Aggregatibacter (Haemophilus) aphrophilus NJ8700.”  Di Bonaventura M.P.et.al.   19447908

External Searches:

  • Search: DB with
  • BLAST ExPASy (Swiss Institute of Bioinformatics (SIB) BLAST)
  • CDD Search (Conserved Domain Database)
  • Search COGs (Clusters of Orthologous Groups of proteins)
  • 2° Structure (Network Protein Sequence Analysis)

Analyze:

Predict TMSs (Predict number of transmembrane segments)
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FASTA formatted sequence
1:	MKLPLPYCVK CGLFFSCFLS FAISLSVHAE QNQVFSIRLK QAPLVPTLQQ LALAQNVNLI 
61:	IDDELQGTVS LQLENVDLDQ LFRSVAKIKQ LDLWQENGIY YLSKLDTSAK FATKMDEPFI 
121:	LPAVMTEEPT RLTTATIKLH FAKASEVMKS LTGGSGSLLS PNGSLTFDDR SNLLLIQDEP 
181:	KSIANLKKLI KELDKPIEQI AIEARIVTMN GESLKELGVR WGMFNPTENA HRIGGSLAGN 
241:	GFDNITNQLN VNFPTATTPA GSVALQVAKI NGRLLDLELT ALERENNVEI IASPRLLTTN 
301:	KKAASIKQGT ELPYILVNEK SGSQSVEFRE AVLGLEVTPH ISQDKQILLD LVVSQNAPGS 
361:	RVAHGLGEVV SIDKQEINTQ VFAKDGETIV LGGVFHDTIT KNVDKVPLLG DIPGVKHLFS 
421:	KESERHQKRE LVIFVTPHIL RQGETLESFK QKQGITQQTK MLPTQNTHKN PTKS