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1.B.23.1.1
SomA porin

Accession Number:O86994
Protein Name:SomA
Length:532
Molecular Weight:57387.00
Species:Synechococcus sp [269084]
Number of TMSs:1
Location1 / Topology2 / Orientation3: Membrane1 / Single-pass membrane protein2
Substrate small molecules

Cross database links:

Pfam: PF04966    PF00395   

Gene Ontology

GO:0016021 C:integral to membrane
GO:0005215 F:transporter activity
GO:0006810 P:transport

References (1)

[1] “Cloning and characterization of the genes coding for two porins in the unicellular cyanobacterium Synechococcus PCC 6301.”  Hansel A.et.al.   9714719

External Searches:

  • Search: DB with
  • BLAST ExPASy (Swiss Institute of Bioinformatics (SIB) BLAST)
  • CDD Search (Conserved Domain Database)
  • Search COGs (Clusters of Orthologous Groups of proteins)
  • 2° Structure (Network Protein Sequence Analysis)

Analyze:

Predict TMSs (Predict number of transmembrane segments)
Window Size: Angle:  
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FASTA formatted sequence
1:	MKRLFSALLL APAIAGVAAG AANANGLSTE QLQKIDAVTP NGITSGQITS ITELSDVKPT 
61:	DWAYQALQSL VERYGCIVGY PDRTYRGSRP LSRYEFAAGL NACLDKVIEF AASKEDLDTL 
121:	KRLTEEFQAE LATLRGRVDS LEARVKELEA TRFSTTTKLQ GEVIFSLDAV ANTAGNERNQ 
181:	DGAVSFGNRV SLNLNTSFTG KDLLLTRLRA RNIETIQQRL SPGFNPSGSR LDYDGTGSPG 
241:	VPNSANTFFL DKLLYRFPVG DVSFTVGTGT AGVQPQDYGL SDATFFSGPA NTKAFKYVGA 
301:	GVYADTRDAD TAGVGFNWKA SKNFSFQAGY INRNSADVST VNSGGVFGFT PTGTGTNSWD 
361:	VNAQVKYQTD NNKFRVALAY ALRNGPYATD FGTTNAFQPF GATNYNSNSL ALSLGWAISD 
421:	AVPLSAGYAL ALSEQGTSQN ATVQNYAIGL TFPNLFADGN EFGVAAGQQP WVSSASNRSS 
481:	EDTGSFGVET YYKFQVTDNI SITPGIYVFN NTQWPAKRWN EYVPFLKTVF RF