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1.B.23.1.2
Putative HCO3- porin, slr0042 gene product

Accession Number:Q59991
Protein Name:Slr0042
Length:576
Molecular Weight:61850.00
Species:Synechocystis sp. (strain PCC 6803) [1148]
Number of TMSs:1
Location1 / Topology2 / Orientation3: Membrane1 / Single-pass membrane protein2
Substrate bicarbonate

Cross database links:

eggNOG: NOG10435
HEGENOM: HBG711171
RefSeq: NP_442734.1   
Entrez Gene ID: 955016   
Pfam: PF04966    PF00395   
BioCyc: SSP1148:SLR0042-MONOMER   
KEGG: syn:slr0042   

Gene Ontology

GO:0016021 C:integral to membrane
GO:0005215 F:transporter activity
GO:0006810 P:transport

References (1)

[1] “Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions.”  Kaneko T.et.al.   8905231

External Searches:

  • Search: DB with
  • BLAST ExPASy (Swiss Institute of Bioinformatics (SIB) BLAST)
  • CDD Search (Conserved Domain Database)
  • Search COGs (Clusters of Orthologous Groups of proteins)
  • 2° Structure (Network Protein Sequence Analysis)

Analyze:

Predict TMSs (Predict number of transmembrane segments)
Window Size: Angle:  
Window Size: Angle:  
FASTA formatted sequence
1:	MKQYRFTWLA GFATVTSLTT FPGSAGAQML YEDVDPMVIT PVQELTTLLD QPMGQVTSVS 
61:	ELRDVQPTDW AYEALKSLVE RYGCIVGYPD RTFRGDRALS RWEFAAGLNA CMNVMERLIQ 
121:	ENVAVIRADI DKLQRLAREF EAELAALGAR VDNLETRTAY LEDNQFSTTT KLNGEVIFSI 
181:	SGATGGEPDS DNAQIVFNDR VRLNLTTSFT GKDALITGLQ AYNFTAGKPI TGTGSVAETL 
241:	FPNDASILGE GMTSFNYEPQ FAGFNPQNLQ PSCGNNSVCL YKLLYVTPVA DNFTVFVGPK 
301:	AEVTDAFPTI VPFASEGQGT LSRAFAINPV LRVSGGTTET GLASAAGFIY KPNDVVDWRA 
361:	LYGSVNAAIP QNEGFPGTPL GAGLFNGSFV AATQLTLYPT ENLDLGFNYA YSYHQLNILG 
421:	TGLTGAAAGT LGGLPLTTPV NVNSVGATLT WRINSSIYFT GYGAYFMVDQ ANGGSAFTDL 
481:	ASWMAGLYFP DAFVEGNTAG LMFGQPLTRV GAGNGATLTP ANISNRATPY QIEAFYNYKI 
541:	NNNLSITPGA FVIFNPEGDS NNSTTGVFAL RTTFTF