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1.B.24.1.8
RjpD outer membrane porin of 233 aas and 3 TMSs.  Transports bile acids such as cholate (Somalinga and Mohn 2013).

Accession Number:Q0RYN1
Protein Name:Possible porin protein MspA
Length:233
Molecular Weight:23728.00
Species:Rhodococcus jostii (strain RHA1) [101510]
Number of TMSs:2
Substrate Cholate, bile acids

Cross database links:

External Searches:

  • Search: DB with
  • BLAST ExPASy (Swiss Institute of Bioinformatics (SIB) BLAST)
  • CDD Search (Conserved Domain Database)
  • Search COGs (Clusters of Orthologous Groups of proteins)
  • 2° Structure (Network Protein Sequence Analysis)

Analyze:

Predict TMSs (Predict number of transmembrane segments)
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FASTA formatted sequence
1:	MTEISTSRFG YRSFTRAVAV AGIAVLAIVL GNGTASAGVD NSSSVVDARG NRIEVLQGDT 
61:	SYQVVPPLDG VPTSVEFFHN GYAEVNITGP NAAEFKGTKL TVGYQIGYPI ALSGATIVLN 
121:	SPGLGFVIGS SNGIDLGLVP TPTLDLHAGS NVGLAGDIIP SQELDIDLAP GGITTVPLLE 
181:	NQSFDGPAAS VRMQGVHGSI SGALGAVTIR PYATAVTSHG DTVTTYGMPQ KLN