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1.B.25.1.10
A tricarboxylate transporting porin, OdpH induced by and transports cis-aconitate, isocitrate and citrate; exhibits a large single channel conductance (Tamber et al., 2006; 2007)

Accession Number:Q9I5H4
Protein Name:OpdH
Length:427
Molecular Weight:46976.00
Species:Pseudomonas aeruginosa [287]
Number of TMSs:1
Location1 / Topology2 / Orientation3: Cell membrane1 / Multi-pass membrane protein2
Substrate Tricarboxylates, cis-aconitate, Isocitrate, Citrate

Cross database links:

HEGENOM: HBG637898
RefSeq: NP_249446.1   
Entrez Gene ID: 882059   
Pfam: PF03573   
BioCyc: PAER208964:PA0755-MONOMER   
KEGG: pae:PA0755   

Gene Ontology

GO:0016021 C:integral to membrane
GO:0015288 F:porin activity
GO:0006810 P:transport

References (1)

[1] “Complete genome sequence of Pseudomonas aeruginosa PAO1, an opportunistic pathogen.”  Stover C.K.et.al.   10984043
Structure:
2Y0L   3T20     

External Searches:

  • Search: DB with
  • BLAST ExPASy (Swiss Institute of Bioinformatics (SIB) BLAST)
  • CDD Search (Conserved Domain Database)
  • Search COGs (Clusters of Orthologous Groups of proteins)
  • 2° Structure (Network Protein Sequence Analysis)

Analyze:

Predict TMSs (Predict number of transmembrane segments)
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FASTA formatted sequence
1:	MSTSLPQAAR SVRSSRSTTL TTTAVVLAGI APLGNAAGFL EDSKASLETR NFYMNRDFRD 
61:	GPGQSKREEW AQGFILNLQS GYTQGTVGFG LDAMGMLGVK LDSGRGRSGT GLLPKDSDGR 
121:	APDTYSKLGL TAKVKVSQSE LKVGTLIPKL PSVQPNNGRI FPQIFEGALL TSKEIKDLGF 
181:	TAGRLEKTKI RDSSDSEDLA LNDKNGRFAG VSADHFDLGG LDYKLTDQLT ASYHYSNLQD 
241:	VYRQHFVGLL HSWPIGPGEL TSDLRFARST DSGSAKAGGI DNKSLNGMFT YSLGNHAFGA 
301:	AWQRMNGDDA FPYLEGSNPY LVNFVQVNDF AGPKERSWQL RYDYDFVGLG IPGLTFMTRY 
361:	VKGDNVELAG QSGEGREWER NTELQYVFQS GALKNLGIRW RNATFRSNFT RDIDENRLIV 
421:	SYTLPIW