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1.B.25.1.11
OpdB proline-selective porin (Tamber et al., 2006)

Accession Number:Q9I0E2
Protein Name:OpdB
Length:435
Molecular Weight:47319.00
Species:Pseudomonas aeruginosa [287]
Location1 / Topology2 / Orientation3: Cell membrane1 / Multi-pass membrane protein2
Substrate Proline

Cross database links:

HEGENOM: HBG637898
RefSeq: NP_251390.1   
Entrez Gene ID: 879077   
Pfam: PF03573   
BioCyc: PAER208964:PA2700-MONOMER   
KEGG: pae:PA2700   

Gene Ontology

GO:0016021 C:integral to membrane
GO:0015288 F:porin activity
GO:0006810 P:transport

References (1)

[1] “Complete genome sequence of Pseudomonas aeruginosa PAO1, an opportunistic pathogen.”  Stover C.K.et.al.   10984043

External Searches:

  • Search: DB with
  • BLAST ExPASy (Swiss Institute of Bioinformatics (SIB) BLAST)
  • CDD Search (Conserved Domain Database)
  • Search COGs (Clusters of Orthologous Groups of proteins)
  • 2° Structure (Network Protein Sequence Analysis)

Analyze:

Predict TMSs (Predict number of transmembrane segments)
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FASTA formatted sequence
1:	MIRVRPVGRL ALFLALGGTS PCHAATEEAK APDYLEWRLL NRNYFLYNDY RRADAGRGYR 
61:	KEWAHGLIVD LESAYTPGRV GFGLDLHGFA GFKLDGGRGH AGTGLLPLDS SGDNASEYSD 
121:	AGAALKLRLG ESLLKVGEMT VETPVFDTSD KRLQPQYARG FFLQSDDLDR VRIQAGRFTA 
181:	FKEQASSSGH GDFDGYGAST AGSAIGFAGA SLAASDNLSG SLFAAQLDNV WRQVYLNMNL 
241:	QRAAFSLDGN LYRTRDQGRS RAGAIDTLAY SLQLKYRVGA QGFSLAYQRV HGDTPFDFVG 
301:	GDSIYLANSI KYADFNGPGE RSWQARYDLD LAPFGLPGLS FMARYVSGRA IDGSHAPAGG 
361:	AYNPLGADGR YRPLQGSGGK HWERDLDLRY LFASGPFKDL SLNVSHLSHR ANAAQAGDDI 
421:	DRLYLIVEYP LKGSL