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1.B.25.1.14
OdpF (OccK2) glucuronate-selective porin; may also transport benzoate and vanillate (Eren et al., 2012). 3-d structure is known (3SZD).

Accession Number:Q9I6P8
Protein Name:Probable porin
Length:421
Molecular Weight:46124.00
Species:Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) [208964]
Substrate glucuronate, Benzoate, Vanillate

Cross database links:

HEGENOM: HBG637898
Entrez Gene ID: 881911   
Pfam: PF03573   
KEGG: pae:PA0240   

Gene Ontology

GO:0016021 C:integral to membrane
GO:0015288 F:porin activity

References (1)

[1] “Complete genome sequence of Pseudomonas aeruginosa PAO1, an opportunistic pathogen.”  Stover C.K.et.al.   10984043
Structure:
3SZD   4FMS     

External Searches:

  • Search: DB with
  • BLAST ExPASy (Swiss Institute of Bioinformatics (SIB) BLAST)
  • CDD Search (Conserved Domain Database)
  • Search COGs (Clusters of Orthologous Groups of proteins)
  • 2° Structure (Network Protein Sequence Analysis)

Analyze:

Predict TMSs (Predict number of transmembrane segments)
Window Size: Angle:  
Window Size: Angle:  
FASTA formatted sequence
1:	MSHPSHVRAL CASLCLGAGL PVHAGHVHAG QGFLEDAKAS LTARNFHLHR NFVGDASQGK 
61:	AEEWTQSFIL DARSGFTQGS VGFGLDVLGL YSLKLDGGKG TAGTQLLPIH DDGRPADDFG 
121:	RLAVAGKLRV SNSELKIGEW MPVLPILRSD DGRSLPQTFR GGQLSANEIA GLTLYAGQFR 
181:	GNSPRNDASM QDMSLFGRPA ATSDRFDFAG GEYRFNGERS LLGLWNAELK DIYRQQYLQL 
241:	QHSQPLGDWL LGANLGGFRG RDAGSARAGK LDNRTVSALF SARYGLHTLY LGLQKVSGDD 
301:	GWMRVNGTSG GTLANDSYNA SYDNPGERSW QLRYDFDFVG LGLPGLTFMT RYLHGDHVRL 
361:	AGVTDDGSEW GRESELGYTL QSGAFKRLNV RWRNSSQRRD WGSNTRFDEN RLIVSYPLSL 
421:	L