TCDB is operated by the Saier Lab Bioinformatics Group
« See all members of the family


1.B.25.1.7
OpdO pyroglutamate-specific porin (Tamber et al., 2006)

Accession Number:Q9I202
Protein Name:OpdO aka PA2113
Length:409
Molecular Weight:44302.00
Species:Pseudomonas aeruginosa [287]
Number of TMSs:1
Location1 / Topology2 / Orientation3: Cell membrane1 / Multi-pass membrane protein2
Substrate Pyroglutamate

Cross database links:

HEGENOM: HBG637898
RefSeq: NP_250803.1   
Entrez Gene ID: 879972   
Pfam: PF03573   
BioCyc: PAER208964:PA2113-MONOMER   
KEGG: pae:PA2113   

Gene Ontology

GO:0016021 C:integral to membrane
GO:0015288 F:porin activity
GO:0006810 P:transport

References (1)

[1] “Complete genome sequence of Pseudomonas aeruginosa PAO1, an opportunistic pathogen.”  Stover C.K.et.al.   10984043
Structure:
2Y0K   3SZV     

External Searches:

  • Search: DB with
  • BLAST ExPASy (Swiss Institute of Bioinformatics (SIB) BLAST)
  • CDD Search (Conserved Domain Database)
  • Search COGs (Clusters of Orthologous Groups of proteins)
  • 2° Structure (Network Protein Sequence Analysis)

Analyze:

Predict TMSs (Predict number of transmembrane segments)
Window Size: Angle:  
Window Size: Angle:  
FASTA formatted sequence
1:	MHPTPRLAAA LLAGSGLGWP LLAQADLVED SHASLELRNF YFNRDFRQSG ARDNADEWAQ 
61:	GFLLRLESGF SEGTVGFGVD AIGLLGFKLD SGSGSGGTGL LPADGSAGGS QDDYAKLGLT 
121:	AKARVSNSLL KVGALHFKSP LVSANDTRLL PELFRGALLD VQEIDGLTLR GAHLDRNKLN 
181:	SSSDYQVFSA NRIGGRSDAF DFAGGDYRLT PALTASLHQG RLKDIYRQTF AGLVHTLDLG 
241:	GQRSLKSDLR FARASEDGGF RELDNRAFGA LFSLRLGAHA VAAGYQRISG DDPYPYIAGS 
301:	DPYLVNFIQI GDFGNVDERS WQLRYDYDFG ALGLPGLSFM SRYVSGDNVA RGAANDGKEW 
361:	ERNTDLGYVV QSGPLKNLGV KWRNATVRSN FANDLDENRL ILSYSLALW