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1.B.33.1.1
Omp85 outer membrane OMP translocase.  The high resolution 3-d structure of the N. gonorrhoea orthologue has been solved (Noinaj et al. 2013).

Accession Number:Q9K1H0
Protein Name:Omp85
Length:797
Molecular Weight:88437.00
Species:Neisseria meningitidis (serogroup B) [491]
Number of TMSs:1
Location1 / Topology2 / Orientation3: Cell outer membrane1
Substrate proteins

Cross database links:

HEGENOM: HBG482361
RefSeq: NP_273240.1   
Entrez Gene ID: 902289   
Pfam: PF01103    PF07244   
BioCyc: NMEN122586:NMB_0182-MONOMER   
KEGG: nme:NMB0182   

Gene Ontology

GO:0009279 C:cell outer membrane
GO:0005886 C:plasma membrane

References (3)

[1] “Complete genome sequence of Neisseria meningitidis serogroup B strain MC58.”  Tettelin H.et.al.   10710307
[2] “Characterization of the protein content of a meningococcal outer membrane vesicle vaccine by polyacrylamide gel electrophoresis and mass spectrometry.”  Vipond C.et.al.   17038831
[3] “Proteomic analysis of a meningococcal outer membrane vesicle vaccine prepared from the group B strain NZ98/254.”  Vipond C.et.al.   16645985
Structure:
4k3b     

External Searches:

  • Search: DB with
  • BLAST ExPASy (Swiss Institute of Bioinformatics (SIB) BLAST)
  • CDD Search (Conserved Domain Database)
  • Search COGs (Clusters of Orthologous Groups of proteins)
  • 2° Structure (Network Protein Sequence Analysis)

Analyze:

Predict TMSs (Predict number of transmembrane segments)
Window Size: Angle:  
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FASTA formatted sequence
1:	MKLKQIASAL MMLGISPLAL ADFTIQDIRV EGLQRTEPST VFNYLPVKVG DTYNDTHGSA 
61:	IIKSLYATGF FDDVRVETAD GQLLLTVIER PTIGSLNITG AKMLQNDAIK KNLESFGLAQ 
121:	SQYFNQATLN QAVAGLKEEY LGRGKLNIQI TPKVTKLARN RVDIDITIDE GKSAKITDIE 
181:	FEGNQVYSDR KLMRQMSLTE GGIWTWLTRS NQFNEQKFAQ DMEKVTDFYQ NNGYFDFRIL 
241:	DTDIQTNEDK TKQTIKITVH EGGRFRWGKV SIEGDTNEVP KAELEKLLTM KPGKWYERQQ 
301:	MTAVLGEIQN RMGSAGYAYS EISVQPLPNA ETKTVDFVLH IEPGRKIYVN EIHITGNNKT 
361:	RDEVVRRELR QMESAPYDTS KLQRSKERVE LLGYFDNVQF DAVPLAGTPD KVDLNMSLTE 
421:	RSTGSLDLSA GWVQDTGLVM SAGVSQDNLF GTGKSAALRA SRSKTTLNGS LSFTDPYFTA 
481:	DGVSLGYDVY GKAFDPRKAS TSIKQYKTTT AGAGIRMSVP VTEYDRVNFG LVAEHLTVNT 
541:	YNKAPKHYAD FIKKYGKTDG TDGSFKGWLY KGTVGWGRNK TDSALWPTRG YLTGVNAEIA 
601:	LPGSKLQYYS ATHNQTWFFP LSKTFTLMLG GEVGIAGGYG RTKEIPFFEN FYGGGLGSVR 
661:	GYESGTLGPK VYDEYGEKIS YGGNKKANVS AELLFPMPGA KDARTVRLSL FADAGSVWDG 
721:	KTYDDNSSSA TGGRVQNIYG AGNTHKSTFT NELRYSAGGA VTWLSPLGPM KFSYAYPLKK 
781:	KPEDEIQRFQ FQLGTTF