TCDB is operated by the Saier Lab Bioinformatics Group
« See all members of the family


1.B.35.1.2
The second oligogalacturonate-specific Gram negative porin, KdgN (60% identical to KdgM; 1.B.35.1.1) (Condemine and Ghazi, 2007).

Accession Number:Q6D4T8
Protein Name:KdgN
Length:243
Molecular Weight:27542.00
Species:Erwinia carotovora subsp. atroseptica (Pectobacterium atrosepticum) [29471]
Number of TMSs:1
Location1 / Topology2 / Orientation3: Membrane1 / Multi-pass membrane protein2
Substrate Oligogalacturonate

Cross database links:

HEGENOM: HBG537174
RefSeq: YP_050397.1   
Entrez Gene ID: 2881876   
Pfam: PF06178   
BioCyc: ECAR218491:ECA2302-MONOMER   
KEGG: eca:ECA2302   

References (1)

[1] “Genome sequence of the enterobacterial phytopathogen Erwinia carotovora subsp. atroseptica and characterization of virulence factors.”  Bell K.S.et.al.   15263089

External Searches:

  • Search: DB with
  • BLAST ExPASy (Swiss Institute of Bioinformatics (SIB) BLAST)
  • CDD Search (Conserved Domain Database)
  • Search COGs (Clusters of Orthologous Groups of proteins)
  • 2° Structure (Network Protein Sequence Analysis)

Analyze:

Predict TMSs (Predict number of transmembrane segments)
Window Size: Angle:  
Window Size: Angle:  
FASTA formatted sequence
1:	MKAKILTMMV TSLISLSSMA VTIDYRHEMQ DTAKNDHKDR LLMSHRFDNG FGLSLEGKWG 
61:	QSKSDTTPNK PYNETVSNGT EVTASYLYKF DKTFGLEGGL NMVSTSDDNN YRPYIKGTAN 
121:	ITDSLYYGLR YRASYLRKSN NIGNTNTAAN PSDIKGYTIT STLGYKLPAN FVVEYEFEYD 
181:	KKTKAGSPGY IADNDNYGLT HNFKLAYKYD KNWTPYAEVG NVVGSKNTDE RQTRYRVGVQ 
241:	YNF