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1.B.39.1.4
The Naphthalene polycyclic aromatic hydrocarbon porin, OmpW (Neher and Lueking, 2009).

Accession Number:Q3K638
Protein Name:OmpW
Length:232
Molecular Weight:24738.00
Species:Pseudomonas fluorescens (strain Pf0-1) [205922]
Location1 / Topology2 / Orientation3: Cell membrane1 / Multi-pass membrane protein2
Substrate Naphthalene

Cross database links:

eggNOG: COG3047
HEGENOM: HBG701154
RefSeq: YP_350750.1    YP_350751.1    YP_350753.1    YP_350754.1    YP_350757.1   
Entrez Gene ID: 3713756    3713757    3713759    3713760    3713763   
Pfam: PF03922   
BioCyc: PFLU205922:PFL_5029-MONOMER   
KEGG: pfo:Pfl01_5029   

Gene Ontology

GO:0009279 C:cell outer membrane
GO:0016021 C:integral to membrane

References (1)

[1] “Genomic and genetic analyses of diversity and plant interactions of Pseudomonas fluorescens.”  Silby M.W.et.al.   19432983

External Searches:

  • Search: DB with
  • BLAST ExPASy (Swiss Institute of Bioinformatics (SIB) BLAST)
  • CDD Search (Conserved Domain Database)
  • Search COGs (Clusters of Orthologous Groups of proteins)
  • 2° Structure (Network Protein Sequence Analysis)

Analyze:

Predict TMSs (Predict number of transmembrane segments)
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FASTA formatted sequence
1:	MNKSLLSASL FALALAAPLA HAHEAGDIIV RAGAITVNPK ADSSSVKVDQ GPLSGTNLGG 
61:	KATMSSDTQL GLNFAYMLTN NIGIELLAAS PFEHDVKIKG TALPAANGKL GTLKHLPPTL 
121:	SVVYYPLDAK SAFQPYIGGG INYTWIYDEH VGSEAQSNGF SNFKAKNSWG LAWQVGADYM 
181:	LTDNIMLNAQ VRYIDIDTRA TVENNAVAPG TRARVNVDVD PFIYMVGLGY KF