TCDB is operated by the Saier Lab Bioinformatics Group
TCIDNameOrganismal TypeExample
1.B.6.1.1
OmpA porin
Bacteria
OmpA of E. coli (P0A910)
1.B.6.1.2

OmpF porin

Bacteria

OmpF (OprF) of Pseudomonas aeruginosa (P13794)
1.B.6.1.3

OmpATb porin (cation selective; pH dependent). The central domain (residues 73-220) has been reported to exhibit channel activity (Molle et al., 2006). However through structural analyses, Teriete et al. (2010) have provided evidence that it does not form a β-barrel, causing them to propose that it does not have porin activity.

Bacteria

OmpATb of Mycobacterium tuberculosis (P65593)
1.B.6.1.4

HMP-AB outer membrane porin (Gribun et al., 2004)

Bacteria

HMP-AB of Acinetobacter baumannii (Q8KWW6)
1.B.6.1.5

The OmpA-OmpF porin (OOP) family member, GmpA (involved in acetic acid fermentation; under quorum sensing control) (Iida et al., 2008). (most similar to 1.B.6.1.4)

Bacteria

GmpA of Gluconacetobacter intermedius (B3A000)
1.B.6.2.1
Outer membrane porin precursor, OmpX (8 TM β-strands) (NMR structures in lipid bilayers solved (Mahalakshmi et al., 2007; Mahalakshmi and Marassi, 2008)
Bacteria
OmpX of E. coli (P0A917)
1.B.6.2.2
The attachment inversion locus (Ail) (Bartra et al., 2007)
Proteobacteria
Ail of Yersinia pestis (Q0WCZ9)