TCDB is operated by the Saier Lab Bioinformatics Group
« See all members of the family


1.B.9.2.2
The 14 TMS hydrocarbon porin, TodX. The x-ray structure is known (3BS0-A) (Hearn et al., 2008).

Accession Number:Q9R9Z8
Protein Name:Membrane protein (Outer membrane protein) (TodX protein)
Length:453
Molecular Weight:48225.00
Species:Pseudomonas putida [303]
Location1 / Topology2 / Orientation3: Cell membrane1
Substrate Hydrocarbons

Cross database links:

Pfam: PF03349   
Drugbank: Drugbank Link   

References (3)

[1] “Toluene metabolism by the solvent-tolerant Pseudomonas putida DOT-T1 strain, and its role in solvent impermeabilization.”  Mosqueda G.et.al.   10333523
[2] “Identification and expression of the cym, cmt, and tod catabolic genes from Pseudomonas putida KL47: expression of the regulatory todST genes as a factor for catabolic adaptation.”  Lee K.et.al.   16728956
[3] “Pseudomonas putida CE2010 can degrade biphenyl by a mosaic pathway encoded by the tod operon and cmtE, which are identical to those of P. putida F1 except for a single base difference in the operator-promoter region of the cmt operon.”  Ohta Y.et.al.   11160798

External Searches:

  • Search: DB with
  • BLAST ExPASy (Swiss Institute of Bioinformatics (SIB) BLAST)
  • CDD Search (Conserved Domain Database)
  • Search COGs (Clusters of Orthologous Groups of proteins)
  • 2° Structure (Network Protein Sequence Analysis)

Analyze:

Predict TMSs (Predict number of transmembrane segments)
Window Size: Angle:  
Window Size: Angle:  
FASTA formatted sequence
1:	MKIASVLALP LSGYAFSVHA TQVFDLEGYG AISRAMGGTS SSYYTGNAAL ISNPATLSFA 
61:	PDGNQFELGL DVVTTDIKVH DSHGAEAKSS TRSNNRGPYV GPQLSYVAQL DDWRFGAGLF 
121:	VSSGLGTEYG SKSFLSQTEN GIQTSFDNSS RLIVLRAPIG FSYQATSKLT FGASVDLVWT 
181:	SLNLELLLPS SQVGALTAQG NLSGGLVPSL AGFVGTGGAA HFSLSRNSTA GGAVDAVGWG 
241:	GRLGLTYKLT DNTVLGAMYN FKTSVGDLEG KATLSAISGD GAVLPLDGDI RVKNFEMPAS 
301:	LTLGLAHQFN ERWVVAADIK RAYWGDVMDS MNVAFISQLG GIDVALPHRY QDITVASIGT 
361:	AYKYNNDLTL RAGYSYAQQA LDSELILPVI PAYLKRHVTF GGEYDFDKDS RINLAISFGL 
421:	RERVQTPSYL AGTEMLRQSH SQINAVVSYS KNF