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1.C.21.1.2
Class I lantibiotic bacteriocin Variacin precursor

Accession Number:Q50848
Protein Name:Variacin
Length:47
Molecular Weight:5009.00
Species:Micrococcus varians [1272]
Location1 / Topology2 / Orientation3: Secreted1
Substrate small molecules, electrolytes, water

Cross database links:

Pfam: PF04604   

Gene Ontology

GO:0005576 C:extracellular region
GO:0019748 P:secondary metabolic process

References (1)

[1] “Variacin, a new lanthionine-containing bacteriocin produced by Micrococcus varians: comparison to lacticin 481 of Lactococcus lactis.”  Pridmore D.et.al.   8633879

External Searches:

  • Search: DB with
  • BLAST ExPASy (Swiss Institute of Bioinformatics (SIB) BLAST)
  • CDD Search (Conserved Domain Database)
  • Search COGs (Clusters of Orthologous Groups of proteins)
  • 2° Structure (Network Protein Sequence Analysis)

Analyze:

Predict TMSs (Predict number of transmembrane segments)
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FASTA formatted sequence
1:	MTNAFQALDE VTDAELDAIL GGGSGVIPTI SHECHMNSFQ FVFTCCS