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1.C.82.1.1
Pore-forming peptide HP(2-20) (Park et al., 2008). (derived from the ribosomal protein L1 N-terminus). The 3-D structure is known (1P0G_A).

Accession Number:Q9ZK21
Protein Name:HP(2-20) aka 50S ribosomal protein L1
Length:234
Molecular Weight:25361.00
Species:Helicobacter pylori J99 (Campylobacter pylori J99) [85963]
Location1 / Topology2 / Orientation3: Cell outer membrane1 / Multi-pass membrane protein2
Substrate small molecules

Cross database links:

eggNOG: COG0081
HEGENOM: HBG297400
RefSeq: NP_223841.1   
Entrez Gene ID: 889759   
Pfam: PF00687   
BioCyc: HPYL85963:JHP1124-MONOMER   
KEGG: hpj:jhp1124   

Gene Ontology

GO:0015934 C:large ribosomal subunit
GO:0019843 F:rRNA binding
GO:0003735 F:structural constituent of ribosome
GO:0000049 F:tRNA binding
GO:0006417 P:regulation of translation
GO:0006396 P:RNA processing
GO:0006412 P:translation

References (1)

[1] “Genomic sequence comparison of two unrelated isolates of the human gastric pathogen Helicobacter pylori.”  Alm R.A.et.al.   9923682

External Searches:

  • Search: DB with
  • BLAST ExPASy (Swiss Institute of Bioinformatics (SIB) BLAST)
  • CDD Search (Conserved Domain Database)
  • Search COGs (Clusters of Orthologous Groups of proteins)
  • 2° Structure (Network Protein Sequence Analysis)

Analyze:

Predict TMSs (Predict number of transmembrane segments)
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FASTA formatted sequence
1:	MAKKVFKRLE KLFSKIQNDK VYGVEHGVEV VKSLASAKFD ETVEVALRLG VDPRHADQMV 
61:	RGAVVLLHGT GKKVRVAVFA KDIKQDEAKN AGADVVGGDD LAEEIKNGRI DFDMVIATPD 
121:	MMAVVGKVGR ILGPKGLMPN PKTGTVTMDI AKAVTNAKSG QVNFRVDKKG NVHAPIGKAS 
181:	FPEEKIKENM LELVKTINRL KPSSAKGKYI RNAALSLTMS PSVNLDAQEL MDIK