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1.E.43.3.2
RDD family protein of 133 aas and 3 TMSs

Accession Number:Q465I3
Protein Name:Putative uncharacterized protein
Length:133
Molecular Weight:15510.00
Species:Methanosarcina barkeri (strain Fusaro / DSM 804) [269797]
Number of TMSs:3
Substrate endolysin

Cross database links:

eggNOG: arNOG14377
HEGENOM: HBG751082
Entrez Gene ID: 3625815   
Pfam: PF06271   
KEGG: mba:Mbar_A3591   

References (1)

[1] “The Methanosarcina barkeri genome: comparative analysis with Methanosarcina acetivorans and Methanosarcina mazei reveals extensive rearrangement within methanosarcinal genomes.”  Maeder D.L.et.al.   16980466

External Searches:

  • Search: DB with
  • BLAST ExPASy (Swiss Institute of Bioinformatics (SIB) BLAST)
  • CDD Search (Conserved Domain Database)
  • Search COGs (Clusters of Orthologous Groups of proteins)
  • 2° Structure (Network Protein Sequence Analysis)

Analyze:

Predict TMSs (Predict number of transmembrane segments)
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FASTA formatted sequence
1:	MQPYSGICRR LIASMIDFFV IIFLFMFLEL ITETLDETLF YILFFLTMWA YFVFQESSIL 
61:	KSTVGKQAVN IIVTDLNGNR ISFKQATMRF ILKILAAIPF FTGFLPIFFT SKKQTFHDIV 
121:	AKTVVFIQED QSQ