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1.G.2.1.1
The Paramyxovirus (Class I) fusion (F) protein (545 aas)

Accession Number:Q5S8E4
Protein Name:Fusion glycoprotein F0
Length:545
Molecular Weight:58315.00
Species:Paramyxovirus GonoGER85 [299729]
Number of TMSs:1
Location1 / Topology2 / Orientation3: Membrane1 / Single-pass type I membrane protein2
Substrate small molecules

Cross database links:

Pfam: PF00523   

Gene Ontology

GO:0020002 C:host cell plasma membrane
GO:0016021 C:integral to membrane
GO:0019031 C:viral envelope
GO:0006948 P:induction by virus of host cell-cell fusion

References (1)

[1] “Sequence motifs and prokaryotic expression of the reptilian paramyxovirus fusion protein.”  Franke J.et.al.   16328138

External Searches:

  • Search: DB with
  • BLAST ExPASy (Swiss Institute of Bioinformatics (SIB) BLAST)
  • CDD Search (Conserved Domain Database)
  • Search COGs (Clusters of Orthologous Groups of proteins)
  • 2° Structure (Network Protein Sequence Analysis)

Analyze:

Predict TMSs (Predict number of transmembrane segments)
Window Size: Angle:  
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FASTA formatted sequence
1:	MTRITILQTV LVLAVPVMCQ VSFDNLEQVG VMFDKPKFLK ITGPASTATM IIKLIPTLGT 
61:	MESCGTSAVN EYKKTLDTIL VPLRDTINKL STDITVVEGT SSIPNKREKR FVGIAIAVGA 
121:	VALATSAQIT AGIALSNTIK NAEAIESIKS SIQASNQAIQ KVIDAQGRTV TVINGIQDHI 
181:	NSVINPALNQ LGCDVAKNTL AISLTQYFSK LSLLFGPNLR NPVEQPLSVQ AIAGLMDGDI 
241:	NAVVSQLGYT QSDLLDLLST ESIVGTVTAV DMGNYMIQIE MSFPQYITIP DTKVLEGHKI 
301:	TFNDKGSEWQ TQVPSTIAVR DILIAGVDPE GCSITSTSYI CKNDPTYAMS EVLTNCFRGK 
361:	TQECPRARIT STFATRFAIA RSTVIANCVA AVCLCGDPGT PVVQKAEVTL TAMTLDQCSL 
421:	VTVDGLQIKP SKSIANVTAN FGNITLGPVV SVGDLDLSAE LTKVQSDLKE AQDKLDESNA 
481:	ILQGINNKIL TAPTSIALIV VSVVIVLLII GMISWLIWLT KAVKRSNTRS ERVTPSTYNN 
541:	LGFIK