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1.G.7.1.1
GAG polyprotein; contains matrix proteins p16, capsid protein p25 and nucleocapsid protein p14 (442aas).

Accession Number:P23425
Protein Name:Gag polyprotein
Length:442
Molecular Weight:49915.00
Species:Maedi visna virus (strain 1514 / clone LV1-1KS2) (MVV) [11744]
Location1 / Topology2 / Orientation3: Virion1
Substrate small molecules

Cross database links:

Pfam: PF00607    PF00098   

Gene Ontology

GO:0019028 C:viral capsid
GO:0003676 F:nucleic acid binding
GO:0008270 F:zinc ion binding
GO:0016032 P:viral reproduction

References (1)

[1] “Isolation of replication-competent molecular clones of visna virus.”  Staskus K.A.et.al.   1847257

External Searches:

  • Search: DB with
  • BLAST ExPASy (Swiss Institute of Bioinformatics (SIB) BLAST)
  • CDD Search (Conserved Domain Database)
  • Search COGs (Clusters of Orthologous Groups of proteins)
  • 2° Structure (Network Protein Sequence Analysis)

Analyze:

Predict TMSs (Predict number of transmembrane segments)
Window Size: Angle:  
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FASTA formatted sequence
1:	MAKQGSKEKK GYPELKEVIK ATCKIRVGPG KETLTEGNCL WALKTIDFIF EDLKTEPWTI 
61:	TKMYTVWDRL KGLTPEETSK REFASLQATL ACIMCSQMGM KPETVQAAKG IISMKEGLQE 
121:	NKEAKGEKVE QLYPNLEKHR EVYPIVNLQA GGRSWKAVES VVFQQLQTVA MQHGLVSEDF 
181:	ERQLAYYATT WTSKDILEVL VMMPGNRAQK ELIQGKLNEE AERWVRQNPP GPNVLTVDQI 
241:	MGVGQTNQQA SQANMDQARQ ICLQWVITAL RSVRHMSHRP GNPMLVKQKN TESYEDFIAR 
301:	LLEAIDAEPV MDPIKTYLKV TLSYTNASTD CQKQMDRTLG TRVQQATVEE KMQACRDVGS 
361:	EGFKMQLLAQ ALRPQGKAGH KGVNQKCYNC GKPGHLARQC RQGIICHHCG KRGHMQKDCR 
421:	QKKQQGNNRR GPRVVPSAPP ML