TCDB is operated by the Saier Lab Bioinformatics Group
« See all members of the family


2.A.1.19.39
Organic cation/carnitine transporter 6 (AtOCT6)

Accession Number:Q9SA36
Protein Name:Organic cation/carnitine transporter 6
Length:521
Molecular Weight:58351.00
Species:Arabidopsis thaliana (Mouse-ear cress) [3702]
Number of TMSs:12
Location1 / Topology2 / Orientation3: Vacuole membrane1 / Multi-pass membrane protein2
Substrate Carnitine, organic cations

Cross database links:

Genevestigator: Q9SA36
eggNOG: COG0477
HEGENOM: HOG000234568
Entrez Gene ID: 838207   
Pfam: PF00083   
KEGG: ath:AT1G16370   

Gene Ontology

GO:0016021 C:integral to membrane
GO:0009705 C:plant-type vacuole membrane
GO:0005524 F:ATP binding
GO:0022857 F:transmembrane transporter activity
GO:0071472 P:cellular response to salt stress
GO:0042631 P:cellular response to water deprivation
GO:0006811 P:ion transport

References (2)

[1] “Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.”  Theologis A.et.al.   11130712
[2] “Stress regulated members of the plant organic cation transporter family are localized to the vacuolar membrane.”  Kuefner I.et.al.   18710496

External Searches:

  • Search: DB with
  • BLAST ExPASy (Swiss Institute of Bioinformatics (SIB) BLAST)
  • CDD Search (Conserved Domain Database)
  • Search COGs (Clusters of Orthologous Groups of proteins)
  • 2° Structure (Network Protein Sequence Analysis)

Analyze:

Predict TMSs (Predict number of transmembrane segments)
Window Size: Angle:  
Window Size: Angle:  
FASTA formatted sequence
1:	MADPISEPLL SHLTDDSGVN EKTRLEALTF DKIVEQSLSD FGFWQFFQIS LVGLALLFDA 
61:	QQIFITVYTD AYPTWHCLNH TICDPSASDI CKLPRSAWEW DGGSQGKSVI SEFGLECSSS 
121:	LLRGMPSSAF YIGAIVGGFF LALIPDDSLG RKKLVLFSTF AMSITSISVI FSTNVWIYTF 
181:	LKFIIGFSRS QTWSYALVLI SERVSTRWRP RATMIPFTLF VLGFMSLSGI AFLAQDSSWR 
241:	YLYLYTSVPA VFYCIFLYLF ALESPRWLHM QGKDKEAIDV LTKMSPKEKA YLESVVSKLP 
301:	LKQENFEQAP TYSIKDFFFR KWAFRRILVV MIIMFGLGIS YYGVPLAARD IDVNIYLSET 
361:	LNALVELPTF VITPILLERF NRRSSVLVNT LLGGASGVLC FVLSILGKTE IAFAFELGTF 
421:	FCARIGFNLM AVFMVEMFPT CVRSSATMMF RQALVVGGAC CPLIASIGRY IPSVSFAIFG 
481:	IAMSGLGMFV LILPETKGLS LCDSMEEQEK RDQAVNTSHV C