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2.A.2.3.2
Pentoside permease

Accession Number:P94488
Protein Name:XynC aka YnaJ
Length:463
Molecular Weight:51486.00
Species:Bacillus subtilis [1423]
Number of TMSs:12
Location1 / Topology2 / Orientation3: Cell membrane1 / Multi-pass membrane protein2
Substrate Pentosides

Cross database links:

HEGENOM: HBG518114
RefSeq: NP_389639.2   
Entrez Gene ID: 939533   
Pfam: PF07690   
KEGG: bsu:BSU17570   

Gene Ontology

GO:0016021 C:integral to membrane
GO:0005886 C:plasma membrane
GO:0015293 F:symporter activity
GO:0006814 P:sodium ion transport
GO:0055085 P:transmembrane transport

References (2)

[1] “The complete genome sequence of the Gram-positive bacterium Bacillus subtilis.”  Kunst F.et.al.   9384377
[2] “From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later.”  Barbe V.et.al.   19383706

External Searches:

  • Search: DB with
  • BLAST ExPASy (Swiss Institute of Bioinformatics (SIB) BLAST)
  • CDD Search (Conserved Domain Database)
  • Search COGs (Clusters of Orthologous Groups of proteins)
  • 2° Structure (Network Protein Sequence Analysis)

Analyze:

Predict TMSs (Predict number of transmembrane segments)
Window Size: Angle:  
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FASTA formatted sequence
1:	MLSENVKKIS MVEKVGYASG DFACNLIYAT VSTYLLFFYT DVFGLSAAAA GTMFLVVRII 
61:	DALADPFIGT IVDRTNSRFG RFRPYLLFGA FPFVILAILC FTTPDFSDMG KLIYAYITYV 
121:	GLSLTYTTIN VPYGALTSAM TRNNQEVVSI TSVRMLFANL GGLVVAFFVP LLAAYLSDTS 
181:	GNESLGWQLT MGILGMIGGC LLIFCFKSTK ERVTLQKSEE KIKFTDIFEQ FRVNRPLVVL 
241:	SIFFIIIFGV NSISNSVGIY YVTYNLERED LVKWYGLIGS LPALVILPFI PRLHQFLGKK 
301:	KLLNYALLLN IIGLLALLFV PPSNVYLILV CRLIAAAGSL TAGGYMWALI PETIEYGEYR 
361:	TGKRMGGLIY AIIGFFFKFG MALGGVVPGL VLDKFGYVAN QAQTPAALMG ILITTTIIPV 
421:	FLLVLALIDI NFYNLDEKKY KNMVRELENR DKVYLDHIDD FKA