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2.A.2.5.2
The putative rhamnogalacturonide porter, RhiT (Rodionov et al. 2004).

Accession Number:Q6D188
Protein Name:Oligogalacturonide transporter
Length:519
Molecular Weight:57725.00
Species:erwinia carotovora subsp. atroseptica [29471]
Number of TMSs:12
Location1 / Topology2 / Orientation3: Membrane1 / Multi-pass membrane protein2
Substrate Rhamnogalacturonides

Cross database links:

HEGENOM: HBG416036
RefSeq: YP_051648.1   
Entrez Gene ID: 2883658   
Pfam: PF07690   
BioCyc: ECAR218491:ECA3560-MONOMER   
KEGG: eca:ECA3560   

Gene Ontology

GO:0055085 P:transmembrane transport

References (1)

[1] “Genome sequence of the enterobacterial phytopathogen Erwinia carotovora subsp. atroseptica and characterization of virulence factors.”  Bell K.S.et.al.   15263089

External Searches:

  • Search: DB with
  • BLAST ExPASy (Swiss Institute of Bioinformatics (SIB) BLAST)
  • CDD Search (Conserved Domain Database)
  • Search COGs (Clusters of Orthologous Groups of proteins)
  • 2° Structure (Network Protein Sequence Analysis)

Analyze:

Predict TMSs (Predict number of transmembrane segments)
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FASTA formatted sequence
1:	MKTRKIGLAN YLAYGSGDFL GAGTTALTAA WLLYFYTTFC GLTPIEATFI FAMARVLDAV 
61:	VSPLMGFLTD NFGSTWLGKR FGRRKFFILL GIPFVFSYSF MWVGDMSYWY YLLTYLLFDV 
121:	VYTMVLVPYE TLVPEMTDDF KQKTKFSGAR IALAQLSAIL AAFLPGILLG YFGKDNAVSF 
181:	FYSSLVFSII CALVLTLVYF FTWERPRDQM SEASLRAEKE RQSLTLGQSL KRLNVELVST 
241:	LRIRIFRQHL GMYLGGYIAQ DVFNAVFTYY VVFVLMQSPT MASNLMGTMA ILQFIAVIGM 
301:	IPLCIRFGPA PSYRLVVCLF GASALSYAAL WYSGLHDTFS LLLLISALAG IGRGGINYVP 
361:	WNTYTYIADV DEVITAQRRE GIFAGIMTLT RKASQAGAVM LVGIVLQLSG FVSGQSVQAP 
421:	SVSHTILMIL SFGTVGVLVL GFLVSLRFKL NLQTHSVLRE ETLKMREAGR PVPEKITPQA 
481:	RATVEMLAGM PYESLWGNNN IGYLNRHNGD KPVTHATQP