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2.A.21.3.11
The alginate oligosaccharide uptake porter, ToaA (Wargacki et al., 2012).

Accession Number:A3UWQ1
Protein Name:Putative transporter
Length:588
Molecular Weight:64758.00
Species:Vibrio splendidus 12B01 [314291]
Number of TMSs:15
Location1 / Topology2 / Orientation3: Membrane1 / Multi-pass membrane protein2
Substrate Alginate oligosaccharides

Cross database links:

Pfam: PF00474   

Gene Ontology

GO:0016021 C:integral to membrane
GO:0005215 F:transporter activity
GO:0006814 P:sodium ion transport
GO:0055085 P:transmembrane transport

External Searches:

  • Search: DB with
  • BLAST ExPASy (Swiss Institute of Bioinformatics (SIB) BLAST)
  • CDD Search (Conserved Domain Database)
  • Search COGs (Clusters of Orthologous Groups of proteins)
  • 2° Structure (Network Protein Sequence Analysis)

Analyze:

Predict TMSs (Predict number of transmembrane segments)
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FASTA formatted sequence
1:	MTIDTFVVLA YFFFLIAIGW MFRKFTTSTS DYFRGGGKML WWMVGATAFM TQFSAWTFTG 
61:	AAGRAFNDGF VIVILFLANA FGYFMNYMYF APKFRQLRVV TAIEAIRQRF GKTSEQFFTW 
121:	AGMPDSLISA GIWLNGLAIF VAAVFNIPME ATIVVTGMVL VLMAVTGGSW AVVASDFMQM 
181:	LVIMAVTITC AVAAYFHGGG LTNIVANFDG DFMLGNNLNY MSIFVLWVVF IFVKQFGVMN 
241:	NSINAYRYLC AKDSENARKA AGLACILMVV GPLIWFLPPW YVSAFMPDFA LEYASMGDKA 
301:	GDAAYLAFVQ NVMPAGMVGL LMSAMFAATM SSMDSGLNRN AGIFVMNFYS PILRQNATQK 
361:	ELVIVSKLTT IMMGIIIIAI GLFINSLRHL SLFDIVMNVG ALIGFPMLIP VLLGMWIRKT 
421:	PDWAGWSTLI VGGFVSYIFG ISLQAEDIEH LFGMETALTG REWSDLKVGL SLAAHVVFTG 
481:	GYFILTSRFY KGLSPEREKE VDQLFTNWNT PLVAEGEEQQ NLDTKQRSML GKLISTAGFG 
541:	ILAMALIPNE PTGRLLFLLC GSMVLTVGIL LVNASKAPAK MNNESVAK