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2.A.21.3.13
The alginate oligosaccharide uptake porter, ToaC (Wargacki et al., 2012).

Accession Number:A3UR54
Protein Name:Putative transporter
Length:552
Molecular Weight:60637.00
Species:Vibrio splendidus 12B01 [314291]
Number of TMSs:13
Location1 / Topology2 / Orientation3: Membrane1 / Multi-pass membrane protein2
Substrate Alginate oligosaccharides

Cross database links:

Pfam: PF00474   

Gene Ontology

GO:0016021 C:integral to membrane
GO:0005886 C:plasma membrane
GO:0005215 F:transporter activity
GO:0006814 P:sodium ion transport
GO:0055085 P:transmembrane transport

External Searches:

  • Search: DB with
  • BLAST ExPASy (Swiss Institute of Bioinformatics (SIB) BLAST)
  • CDD Search (Conserved Domain Database)
  • Search COGs (Clusters of Orthologous Groups of proteins)
  • 2° Structure (Network Protein Sequence Analysis)

Analyze:

Predict TMSs (Predict number of transmembrane segments)
Window Size: Angle:  
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FASTA formatted sequence
1:	MLWWMVGATA FMTQFSAWTF TGAAGKAFTD GFAVAIIFIA NAFGYLMNYL YFAPKFRQLR 
61:	VVTVIEAIRM RFGKVNEQVF TWSGMPNSVI SAGIWLNGLA IIASGIFGFD MTTTIVLTGL 
121:	VVLVMSVTGG SWAVIASDFM QMVIIMAVTV TCAVVAVYHG GGVTQIINDF PTDSFITGDN 
181:	LNYLSIFSIW AVFIFLKQFS ITNNMLNSYR YLAAKDSNNA RKAALLACVL MTLGPIIWFM 
241:	PSWFMAGQGV DLAAAYPEAG SKAADFAYLY FVQEYMPVGM VGLLIAAMFA ATMSSMDSGL 
301:	NRNSGIFVKN FYEPILRPKA TEKELMVVSK LTSTFFGIAI ILVALFINSL KGLSLFDTMM 
361:	YVGALIGFPM TIPAFCGFFI RKTPDWAGWG TLVVGGVVSY FVGFVITADM IQNWFGLNEL 
421:	TGREWADLKV AIGLIGHIVF TAGFFVLSTL FYKPLPEHRE KDVDKFFNNL ATPLVAESNE 
481:	QKKLDNKQRR MLGSLIAVAG VGVMTMFVLP NPMWGRMVFV LCGLIVFSVG LLLVKAVDDK 
541:	VEQQDEVTPA EG