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2.A.45.2.5
Inner membrane protein YbiR

Accession Number:P75788
Protein Name:Inner membrane protein YbiR
Length:372
Molecular Weight:41169.00
Species:Escherichia coli (strain K12) [83333]
Number of TMSs:10
Location1 / Topology2 / Orientation3: Cell inner membrane1 / Multi-pass membrane protein2
Substrate Unknown

Cross database links:

Genevestigator: P75788 P75788
EchoBASE: EB3107 EB3107
EcoGene: EG13323 EG13323
eggNOG: COG0471 COG0471
HEGENOM: HOG000253850 HOG000253850
Entrez Gene ID: 945438    945438   
Pfam: PF03600    PF03600   
KEGG: eco:b0818    eco:b0818   

Gene Ontology

GO:0016021 C:integral to membrane
GO:0005886 C:plasma membrane
GO:0015137 F:citrate transmembrane transporter activity
GO:0016021 C:integral to membrane
GO:0005886 C:plasma membrane
GO:0015137 F:citrate transmembrane transporter activity

References (8)

[1] “A 718-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 12.7-28.0 min region on the linkage map.”  Oshima T.et.al.   8905232
[2] “The complete genome sequence of Escherichia coli K-12.”  Blattner F.R.et.al.   9278503
[3] “Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110.”  Hayashi K.et.al.   16738553
[4] “Global topology analysis of the Escherichia coli inner membrane proteome.”  Daley D.O.et.al.   15919996
[5] “A 718-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 12.7-28.0 min region on the linkage map.”  Oshima T.et.al.   8905232
[6] “The complete genome sequence of Escherichia coli K-12.”  Blattner F.R.et.al.   9278503
[7] “Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110.”  Hayashi K.et.al.   16738553
[8] “Global topology analysis of the Escherichia coli inner membrane proteome.”  Daley D.O.et.al.   15919996

External Searches:

  • Search: DB with
  • BLAST ExPASy (Swiss Institute of Bioinformatics (SIB) BLAST)
  • CDD Search (Conserved Domain Database)
  • Search COGs (Clusters of Orthologous Groups of proteins)
  • 2° Structure (Network Protein Sequence Analysis)

Analyze:

Predict TMSs (Predict number of transmembrane segments)
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FASTA formatted sequence
1:	MSLPFLRTLQ GDRFFQLLIL VGIGLSFFVP FAPKSWPAAI DWHTIITLSG LMLLTKGVEL 
61:	SGYFDVLGRK MVRRFATERR LAMFMVLAAA LLSTFLTNDV ALFIVVPLTI TLKRLCEIPV 
121:	NRLIIFEALA VNAGSLLTPI GNPQNILIWG RSGLSFAGFI AQMAPLAGAM MLTLLLLCWC 
181:	CFPGKAMQYH TGVQTPEWKP RLVWSCLGLY IVFLTALEFK QELWGLVIVA AGFALLARRV 
241:	VLSVDWTLLL VFMAMFIDVH LLTQLPALQG VLGNVSHLSE PGLWLTAIGL SQVISNVPST 
301:	ILLLNYVPPS LLLVWAVNVG GFGLLPGSLA NLIALRMAND RRIWWRFHLY SIPMLLWAAL 
361:	VGYVLLVILP AN