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9.B.27.2.3
DedA (SNARE-associated protein) (Putative selenite transport protein, Ledgham et al., 2005). Topology known (Daley et al., 2005)

Accession Number:P0ABP6
Protein Name:Protein dedA
Length:219
Molecular Weight:24510.00
Species:Escherichia coli (strain K12) [83333]
Number of TMSs:6
Location1 / Topology2 / Orientation3: Cell inner membrane1 / Multi-pass membrane protein2

Cross database links:

Genevestigator: P0ABP6
EchoBASE: EB0212
EcoGene: EG10216
eggNOG: COG0586
HEGENOM: HBG657460
DIP: DIP-48027N
Entrez Gene ID: 946798   
Pfam: PF09335   
KEGG: ecj:JW2314    eco:b2317   

Gene Ontology

GO:0016021 C:integral to membrane
GO:0005886 C:plasma membrane

References (7)

[1] “The hisT-purF region of the Escherichia coli K-12 chromosome. Identification of additional genes of the hisT and purF operons.”  Nonet M.L.et.al.   3040734
[2] “Construction of a contiguous 874-kb sequence of the Escherichia coli-K12 genome corresponding to 50.0-68.8 min on the linkage map and analysis of its sequence features.”  Yamamoto Y.et.al.   9205837
[3] “The complete genome sequence of Escherichia coli K-12.”  Blattner F.R.et.al.   9278503
[4] “Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110.”  Hayashi K.et.al.   16738553
[5] “Structural analysis of the Escherichia coli K-12 hisT operon by using a kanamycin resistance cassette.”  Arps P.J.et.al.   3029016
[6] “Growth rate regulation of Escherichia coli acetyl coenzyme A carboxylase, which catalyzes the first committed step of lipid biosynthesis.”  Li S.-J.et.al.   7678242
[7] “Global topology analysis of the Escherichia coli inner membrane proteome.”  Daley D.O.et.al.   15919996

External Searches:

  • Search: DB with
  • BLAST ExPASy (Swiss Institute of Bioinformatics (SIB) BLAST)
  • CDD Search (Conserved Domain Database)
  • Search COGs (Clusters of Orthologous Groups of proteins)
  • 2° Structure (Network Protein Sequence Analysis)

Analyze:

Predict TMSs (Predict number of transmembrane segments)
Window Size: Angle:  
FASTA formatted sequence 
1:	MDLIYFLIDF ILHIDVHLAE LVAEYGVWVY AILFLILFCE TGLVVTPFLP GDSLLFVAGA 
61:	LASLETNDLN VHMMVVLMLI AAIVGDAVNY TIGRLFGEKL FSNPNSKIFR RSYLDKTHQF 
121:	YEKHGGKTII LARFVPIVRT FAPFVAGMGH MSYRHFAAYN VIGALLWVLL FTYAGYFFGT 
181:	IPMVQDNLKL LIVGIIVVSI LPGVIEIIRH KRAAARAAK