1.C.52 The Dermaseptin (Dermaseptin) Family

Dermaseptins are antimicrobial peptides, synthesized by frog skin cells with activity against a broad range of organisms (Gram-positive and Gram-negative bacteria, protozoa including Leishmania and Plasmodium species, yeast, and filamentous fungi including species of Aspergillus). There are at least two subgroups of dermaseptins: group B and group S. Functional synergy is observed when different dermaseptin Ss are simultaneously present (>100 x effect). Dermaseptin S3 can be shortened from 30 aas to 16 aas without decreasing activity. These peptides permeabilize biological and artificial membranes. They may form amphipathic α-helical structures, β-structures or mixtures of these, particularly in the presence of anionic lipids. They dissipate the valinomycin-induced membrane potential in liposomes. Dermaseptin S3 inserts more deeply into anionic phospholipid liposomes than those of zwiterionic phospholipids.

Dermaseptins are similiar in sequence to other secreted peptides such as gaegurins, esculentins, brevinins temporins, ranatuerins, tryptophyllins and caerins. They also show sequence similarity with the opioid peptides, dermorphin, dermenkephalin and deltorphins. Finally, they are probably distantly related to ceratotoxins of insects, cecropins of insects (TC #1.C.17), and pleurocidins such as chrysophsin 1 (P83545) from the red sea beam (TC #1.C.62) (Bessin et al., 2004).

Skin secretions of hylid frogs show amazing levels of interspecific and intraspecific diversity and are comprised of a cocktail of genetically-related, but markedly diverse antimicrobial peptides that are grouped into a superfamily, termed the dermaseptins, comprising several families: dermaseptins (sensu stricto), phylloseptins, plasticins, dermatoxins, phylloxins, hyposins, caerins, and aureins. Dermaseptin gene superfamily evolution is characterized by repeated gene duplications and focal hypermutations of the mature peptide coding sequence, followed by positive (diversifying) selection. Nicolas and El Amri, 2008 reviewed molecular mechanisms leading to vast combinatorial peptide libraries.  They also evaluated the structural and functional properties of antimicrobial peptides of the dermaseptin and plasticin families, as well as those of dermaseptin S9, an amyloidogenic peptide with antimicrobial and chemoattractant activities.

Temporins constitute a family of amphipathic alpha-helical antimicrobial peptides (AMP) and contain some of the shortest cytotoxic peptides  comprised of only 10-14 residues. General characteristics of temporins parallel those of other AMP, both in terms of structural features and biophysical properties relating to their interactions with membrane lipids. Selective lipid-binding properties underlie the discrimination between target vs host cells (Mahalka and Kinnunen, 2009). Lipid-binding properties also contribute to the permeabilization of their target cell membranes. The latter functional property of AMP involves highly interdependent acidic phospholipid-induced conformational changes, aggregation, and formation of toxic oligomers in the membrane. These oligomers are subsequently converted to amyloid-type fibers, as demonstrated for temporins B and L, and dermaseptins. The amyloid state represents the generic minimum in the folding/aggregation free energy landscape, and for AMP, its formation most likely serves to detoxify the peptides, in keeping with the current consensus on mature amyloid being inert and non-toxic. This above scenario is supported by sequence analyses of temporins as well as other amphipathic alpha-helical AMP belonging to diverse families. Accordingly, sequence comparison identifies 'conformational switches', domains with equal probabilities for adopting random coil, alpha-helical and beta-sheet structures. These regions aggregate and assemble into amyloid beta-sheets. The lipid-binding properties and structural characterization lend support to the notion that the mechanism of membrane permeabilization by temporins B and L and perhaps of most AMP could be very similar to that of the paradigm amyloid forming cytotoxic peptides responsible for degenerative cell loss in prion, Alzheimer's and Parkinson's diseases, and type 2 diabetes (Mahalka and Kinnunen, 2009).

The reaction presumed to be catalyzed by Dermaseptin family members is:

Ions (in) ions (out)



This family belongs to the Cecropin Superfamily.

 

References:

Bessin, Y., N. Saint, L. Marri, D. Marchini, and G. Molle. (2004). Antibacterial activity and pore-forming properties of ceratotoxins: a mechanism of action based on the barrel stave model. Biochim. Biophys. Acta 1667: 148-156.

Charpentier, S., M. Amiche, J. Mester, V. Vouille, J.P. Le Caer, P. Nicolas. and A. Delfour. (1998). Structure, synthesis, and molecular cloning of dermaseptins B, a family of skin peptide antibiotics. J. Biol. Chem. 273: 14690-14697.

Fernandez DI., Gehman JD. and Separovic F. (2009). Membrane interactions of antimicrobial peptides from Australian frogs. Biochim Biophys Acta. 1788(8):1630-8.

Gusmão, K.A., D.M. Dos Santos, V.M. Santos, M.E. Cortés, P.V. Reis, V.L. Santos, D. Piló-Veloso, R.M. Verly, M.E. de Lima, and J.M. Resende. (2017). Ocellatin peptides from the skin secretion of the South American frog Leptodactylus labyrinthicus (Leptodactylidae): characterization, antimicrobial activities and membrane interactions. J Venom Anim Toxins Incl Trop Dis 23: 4.

Hu, K., Y. Jiang, Y. Xie, H. Liu, R. Liu, Z. Zhao, R. Lai, and L. Yang. (2015). Small-Anion Selective Transmembrane "Holes" Induced by an Antimicrobial Peptide Too Short to Span Membranes. J Phys Chem B 119: 8553-8560.

Mahalka, A.K. and P.K. Kinnunen. (2009). Binding of amphipathic α-helical antimicrobial peptides to lipid membranes: lessons from temporins B and L. Biochim. Biophys. Acta. 1788: 1600-1609.

Mayer, S.F., J. Ducrey, J. Dupasquier, L. Haeni, B. Rothen-Rutishauser, J. Yang, A. Fennouri, and M. Mayer. (2019). Targeting specific membranes with an azide derivative of the pore-forming peptide ceratotoxin A. Biochim. Biophys. Acta. Biomembr 1861: 183023.

Mechler, A., S. Praporski, K. Atmuri, M. Boland, F. Separovic, and L.L. Martin. (2007). Specific and selective peptide-membrane interactions revealed using quartz crystal microbalance. Biophys. J. 93: 3907-3916.

Moll, G.N., S. Brul, W.N. Konings, and A.J. Driessen. (2000). Comparison of the membrane interaction and permeabilization by the designed peptide Ac-MB21-NH2 and truncated dermaseptin S3. Biochemistry 39: 11907-11912.

Nicolas P. and El Amri C. (2009). The dermaseptin superfamily: a gene-based combinatorial library of antimicrobial peptides. Biochim Biophys Acta. 1788(8):1537-50.

Nicolas, P. and A. Mor. (1995). Peptides as weapons against microorganisms in the chemical defense system of vertebrates. Annu. Rev. Microbiol. 49: 277-304.

Rinaldi, A.C. (2002). Antimicrobial peptides from amphibian skin: an expanding scenario. Curr. Opin. Chem. Biol. 6: 799-804.

Rinaldi, A.C., M.L. Mangoni, A. Rufo, C. Luzi, D. Barra, H. Zhao, P.K.J. Kinnunen, A. Bozzi, A. Di Giulio, and M. Simmaco. (2002). Temporin L: antimicrobial, haemolytic and cytotoxic activities, and effects on membrane permeabilization in lipid vesicles. Biochem. J. 368: 91-100.

Sherman, P.J., R.J. Jackway, J.D. Gehman, S. Praporski, G.A. McCubbin, A. Mechler, L.L. Martin, F. Separovic, and J.H. Bowie. (2009). Solution structure and membrane interactions of the antimicrobial peptide fallaxidin 4.1a: an NMR and QCM study. Biochemistry 48: 11892-11901.

Tamang, D.G. and M.H. Saier, Jr. (2006). The cecropin superfamily of toxic peptides. J. Mol. Microbiol. Biotechnol. 11: 94-103.

Zhao, H., A.C. Rinaldi, A. Di Giulio, M. Simmaco, and P.K.J. Kinnunen. (2002). Interactions of the antimicrobial peptides temporins with model biomembranes. Comparison of temporins B and L. Biochemistry 41: 4425-4436.

Examples:

TC#NameOrganismal TypeExample
1.C.52.1.1

Dermaseptin B1 precursor

Amphibians Dermaseptin B1 of Phyllomedusa bicolor
 
1.C.52.1.10PBN1 precursorAmphibiansPBN1 precursor of Phyllomedusa bicolor
 
1.C.52.1.11

Preprofallaxidin-6 (green tree frog) (71% identical to 1.C.52.1.9).  The NMR structure of the mature peptide (Fallaxidin 4.1a) reveals a helical structure in detergent solultions.  Pore formation is established (Sherman et al. 2009).

Amphibians

Fallaxidin of Litoria fallax (B5LUQ8)

 
1.C.52.1.12Phylloseptin-7 (orange legged leaf frog) (81% identical to 1.C.52.1.10).

Amphibians

Phylloseptin of Phyllomedusa hypochondrialis (P84572)

 
1.C.52.1.13Raniseptin-1 (55% identical to 1.C.52.1.1).

Amphibians

Raniseptin-1 of Hypsiboas raniceps (P86037)

 
1.C.52.1.14Kininogen-1 (71% identical to 1.C.52.1.10).

Amphibians

Kininogen-1 of Phyllomedusa sauvagei (Q800F1).

 
1.C.52.1.15Vespakinin-M precursor (also homologous to Melittin)

Wasps

Vespakinin of Vespa magnifica (Q0PQX8)

 
1.C.52.1.16

Brevienin-1E of 71 aas

Amphibians (frog)

Brevenin-iE of Pelophylex esulentus

 
1.C.52.1.17

Ranakinin-N of 58 aas

Amphibians (frog)

Ranakinin-N of Hylarana nigrovittata

 
1.C.52.1.18

Prepromelittin amphibian defense peptide

Amphibians

Prepromelittin of Rana andersonii (E3SZK1)

 
1.C.52.1.19

Rufosusi-spotted torrent frog Amolopin-3a anti-microbial peptide

Amphibians

Amolopin-3a of Amolops loloensis (A6XFB5)

 
1.C.52.1.2Brevinin 2EF precursor Amphibians Brevinin-2EF of Rana esculenta
 
1.C.52.1.20

Demaseptin-1

Amphibians

Dermaseptin-1 of Phyllomedusa hypochondrialis (P84596)

 
1.C.52.1.21

Brevinin-2HS of 70 aas and 2 TMSs.

Animals

Brevinin-2HS of Odorrana schmackeri (Schmacker's frog) (Rana schmackeri)

 
1.C.52.1.22

Rhacophorin-2 of 72 aas and 2 TMSs.

Animals

Rhacophori-2 of Rhacophorus feae (Thao whipping frog)

 
1.C.52.1.23

Hainanensin-1 of 67 aas and 2 TMSs

Animals

Hainanensin-1 of Odorrana hainanensis (Odor frog) (Rana hainanensis)

 
1.C.52.1.24

Amurin-1 of 70 aas and 2 TMSs

Animals

Amurin-1 of Rana amurensis (Korean brown frog)

 
1.C.52.1.25

Viridimin-1 of 66 aas and 2 TM

Animals

Viridimin-1 of Amolops viridimaculatus (Dahaoping sucker frog)

 
1.C.52.1.26

Amolopin-1a of 70 aas

Animals

Amolopin-1a of Amolops loloensis (rufous-spotted torrent frog)

 
1.C.52.1.27

Andersonin of 72 aas

Animals

Andersonin of Odorrana andersonii (golden crossband frog)

 
1.C.52.1.28

Lividin-1 of 68 aas

Animals

Lividin-1 of Odorrana livida (green cascade frog)

 
1.C.52.1.29

Kunyuenin of 62 aas

Animals

Kunyuenin of Rana kunyuensis

 
1.C.52.1.3Gaegurin-4 precursor Amphibians Gaegurin-4 of Rana rugosa
 
1.C.52.1.30

Japonicin-1Ja of 61 aas

Animals

Japonicin-1Ja of Rana japonica (Japanese reddish frog)

 
1.C.52.1.31

Limnonectin-1Fa of 62 aas

Animals

Limnonectin-1Fa of Limnonectes fujianensis (Fujian large-headed frog)

 
1.C.52.1.32

Jingdongin-1 of 63 aas

Animals

Jingdongin-1 of Amolop jingdongensis (Chinese torrent frog)

   
 
1.C.52.1.33

Frenatin-3 of 68 aas

Animals

Frenatin-2 of Litoria infrafrenata (Giant tree frog) (White-lipped tree frog)

 
1.C.52.1.34

Antimicrobial peptide odorranain B4 of 63 aas.  A 15 aa disulfide bonded peptide, ORB-1 (LKGCWTKSIPPKPCF), too short to pass through a membrane, forms anion selective channels (Hu et al. 2015).

Animals

odorranain B4 of Odorrana grahami (Yunnanfu frog) (Rana grahami)

 
1.C.52.1.35

Pore-forming Ocellatin-PT1 of 66 aas (Gusmão et al. 2017).

Ocellatin-PT1 of Leptodactylus pustulatus (Ceara white-lipped frog)

 
1.C.52.1.4Esculentin-1b precursor Amphibians Esculentin-1b of Rana esculenta
 
1.C.52.1.5Temporin G precursorAmphibiansTemporin G precursor of Rana temporaria
 
1.C.52.1.6Temporin B precursorAmphibiansTemporin B precursor of Rana temporaria
 
1.C.52.1.7Ranatuerin-2P precursorAmphibiansRanatuerin-2P precursor of Rana pipiens
 
1.C.52.1.8Tryptophyllin-1 precursorAmphibiansTryptophyllin-1 precursor of Pachymedusa dacnicolor
 
1.C.52.1.9Caerin 1.1.5 precursor; similar to maculatin 1.1 of Litoria genimaculata (1.C.76.1.1) (Fernandez et al., 2008; Mechler et al., 2007).

Amphibians

Caerin 1.1.5 precursor of Litoria caerulea

 
Examples:

TC#NameOrganismal TypeExample
1.C.52.2.1

Ceratotoxin A, CtxA, of 72 aas and 2 TMSs.  It forms one of the largest pores among the group of ceratotoxins (Mayer et al. 2019).

Insects

CtxA of Ceratitis capitata (medfly) (P36190)