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2.A.5 The Zinc (Zn2+)-Iron (Fe2+) Permease (ZIP) Family
Most members of the ZIP family consist of 220-650 amino acyl residues with eight putative transmembrane spanners. However, LIV1 of man has been reported to have only 6 TMSs, although it exhibits 8 hydrophobic peaks, and the IAA-alanine resistance protein 1 (Iar1 of A. thaliana) also exhibits 8 TMSs (Lasswell et al., 2000). They are derived from animals, plants, yeast, bacteria and archaea. They comprise a diverse family, with several paralogues in any one organism (e.g., 14 in mammals, at least 5 in Caenorhabditis elegans and Arabidopsis thaliana, and two in Saccharomyces cervisiae). The various mammalian paralogues fall into four subfamilies and are found in a variety of cell types, cell locations and tissues, and some are responsive to hormones and cytokines. Thus, Zip6 (LIV1) is estrogen responsive in breast cancer cells and is related to metastasis in lymph nodes. Zip8 (Big M103) is TNFα and endotoxin induced in monocytes. The two S. cerevisiae proteins, Zrt1 and Zrt2, both probably transport Zn2+ with high specificity, but Zrt1 transports Zn2+ with ten-fold higher affinity than Zrt2. Some members of the ZIP family have been shown to transport Zn2+ while others transport Fe2+, and a few have been shown to transport a range of metal ions. One human protein member of the ZIP family is designated 'growth arrest inducible gene product,' but its presumed transport activity has not been identified. A second human protein, Zip4, is a Zn2+ uptake permease and a disease protein (Cousins et al., 2006). Histidine-rich repeats are found in extracellular N- and C-termini as well as a long intracellular loop, and Zip14 has an extra extracellular his-rich loop. One family of mammalian Zip proteins (the LZT family) has a metaprotease motif (HEXPHEXGD) that may allow them to function as matrix metaloproteases. Zip10 has C2H2 zinc finger and cytochrome c motifs in its first TMS (Cousins et al., 2006).
The energy source for transport has not been characterized, but these systems probably function as secondary carriers. They do not require ATP (Cousins et al., 2006). In one study, uptake of Zn2+ via the hZip2 permease was energy independent, independent of Na+ and K+ gradients, but stimulated by HCO3- (Gaither and Eide, 2000). The authors propose a Zn2+:HCO3- symport mechanism. hZip1 is the major Zn2+ uptake system in many human tissues (Gaither and Eide, 2001).
Mice deficient in Zn transporter Slc39a13/Zip13 show changes in bone, teeth, and connective tissues, reminiscent of the clinical spectrum of human Ehlers-Danlos syndrome (EDS), of some features of osteogenesis imperfecta and Zn deficient disorders. The Zip13 knockout (Zip13-KO) mice show defects in the function of osteoblasts, chondrocytes, odontoblasts and fibroblasts. Zip13 protein is localized to the Golgi in the corresponding cells. Impairment in BMP and TGF-beta signaling were observed in Zip13-KO cells (Fukada et al., 2008).
The generalized transport reaction for members of the ZIP family is:
Me2+ (out) + (pmf) → Me2+ (in).
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| References: |
Breitwieser, W., C. Price, and T. Schuster. (1993). Identification of a gene encoding a novel zinc finger protein in Saccharomyces cerevisiae. Yeast 9: 551-556.
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Cousins, R.J., J.P. Liuzzi, and L.A. Lichten. (2006). Mammalian zinc transport, trafficking, and signals. J. Biol. Chem. 281: 24085-24089.
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Dufner-Beattie J., S.J. Langmade, F. Wang, D. Eide, G.K. Andrews. (2003). Structure, function, and regulation of a subfamily of mouse zinc transporter genes. J. Biol. Chem. 278: 50142-50150.
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Dufner-Beattie, J., F. Wang, Y.M. Kuo, J. Gitschier, D. Eide, and G.K. Andrews. (2003). The Acrodermatitis enteropathica gene ZIP4 encodes a tissue-specific, zinc-regulated zinc transporter in mice. J. Biol Chem. 278: 33474-33481.
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Eide, D. and M.L. Guerinot. (1997). Metal ion uptake in eukaryotes. ASM News 63: 199-205.
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Eide, D., M. Broderius, J. Fett, and M.L. Guerinot. (1996). A novel iron-regulated metal transporter from plants identified by functional expression in yeast. Proc. Natl. Acad. Sci. USA 93: 5624-5628.
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Eng, B.H., M.L. Guerinot, D. Eide, and M.H. Saier, Jr. (1998). Sequence analyses and phylogenetic characterization of the ZIP family of metal ion transport proteins. J. Membr. Biol. 166: 1-7.
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Fukada, T., N. Civic, T. Furuichi, S. Shimoda, K. Mishima, H. Higashiyama, Y. Idaira, Y. Asada, H. Kitamura, S. Yamasaki, S. Hojyo, M. Nakayama, O. Ohara, H. Koseki, H.G. Dos Santos, L. Bonafe, R. Ha-Vinh, A. Zankl, S. Unger, M.E. Kraenzlin, J.S. Beckmann, I. Saito, C. Rivolta, S. Ikegawa, A. Superti-Furga, and T. Hirano. (2008). The zinc transporter SLC39A13/ZIP13 is required for connective tissue development; its involvement in BMP/TGF-beta signaling pathways. PLoS One 3: e3642.
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Gaither, L.A. and D.J. Eide. (2000). Functional expression of the human hZIP2 zinc transporter. J. Biol. Chem. 275: 5560-5564.
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Gaither, L.A. and D.J. Eide. (2001). The human ZIP1 transporter mediates zinc uptake in human K562 erythroleukemia cells. J. Biol. Chem. 276: 22258-22264.
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Grass, G., S. Franke, N. Taudte, D.H. Nies, L.M. Kucharski, M.E. Maguire, and C. Rensing. (2005). The metal permease ZupT from Escherichia coli is a transporter with a broad substrate spectrum. J. Bacteriol. 187: 1604-1611.
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Grotz, N., T. Fox, E. Connolly, W. Park, M.L. Guerinot, and D. Eide. (1998). Identification of a family of zinc transporter genes from Arabidopsis that respond to zinc deficiency. Proc. Natl. Acad. Sci. USA 95: 7220-7224.
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Grover, A., and Sharma R. (2006). Identification and Characterization of a Major Zn(II) Resistance Determinant of Mycobacterium smegmatis. J. Bact. 188: 7026-7032.
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Huang, L., C.P. Kirschke, Y. Zhang, and Y.Y. Yu. (2005). The ZIP7 gene (Slc39a7) encodes a zinc transporter involved in zinc homeostasis of the Golgi apparatus. J. Biol. Chem. 280: 15456-15463.
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Huynh, C. and N.W. Andrews. (2008). Iron acquisition within host cells and the pathogenicity of Leishmania. Cell Microbiol 10: 293-300.
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Kagara, N., N. Tanaka, S. Noguchi, and T. Hirano. (2007). Zinc and its transporter ZIP10 are involved in invasive behavior of breast cancer cells. Cancer Sci. 98: 692-697.
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Korshunova, Y.O., D. Eide, W.G. Clark, M.L. Guerinot, and H.B. Pakrasi. (1999). The IRT1 protein from Arabidopsis thaliana is a metal transporter with a broad substrate range. Plant Mol. Biol. 40: 37-44.
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Kumanovics, A., K.E. Poruk, K.A. Osborn, D.M. Ward, and J. Kaplan. (2006). YKE4 (YIL023C) encodes a bidirectional zinc transporter in the endoplasmic reticulum of Saccharomyces cerevisiae. J. Biol. Chem. 281: 22566-22574.
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Lasswell, J., L.E. Rogg, D.C. Nelson, C. Rongey, and B. Bartel. (2000). Cloning and characterization of IAR1, a gene required for auxin conjugate sensitivity in Arabidopsis. Plant Cell 12: 2395-2408.
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Lin, S.J. and V.C. Culotta. (1996). Suppression of oxidative damage by Saccharomyces cerevisiae ATX2, which encodes a manganese-trafficking protein that localizes to Golgi-like vesicles. Mol. Cell. Biol. 16: 6303-6312.
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Liu, Z., H. Li, M. Soleimani, K. Girijashanker, J.M. Reed, L. He, T.P. Dalton, and D.W. Nebert. (2008). Cd2+ versus Zn2+ uptake by the ZIP8 HCO3--dependent symporter: kinetics, electrogenicity and trafficking. Biochem. Biophys. Res. Commun. 365: 814-820.
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Radisky, D. and J. Kaplan. (1999). Regulation of transition metal transport across the yeast plasma membrane. J. Biol. Chem. 274: 4481-4484.
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Schaaf, G., A. Honsbein, A.R. Meda, S. Kirchner, D. Wipf, and N. von Wiren. (2006). AtIREG2 encodes a tonoplast transport protein involved in iron-dependent nickel detoxification in Arabidopsis thaliana roots. J. Biol. Chem. 281: 25532-25540.
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Taudte, N. and G. Grass. (2010). Point mutations change specificity and kinetics of metal uptake by ZupT from Escherichia coli. Biometals. [Epub: Ahead of Print]
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Taylor, K.M. and R.I. Nicholson. (2003). The LZT proteins: the LIV-1 subfamily of zinc transporters. Biochim. Biophys. Acta 1611: 16-30.
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Yamashita, S., C. Miyagi, T. Fukada, N. Kagara, Y.-S. Che, and T. Hirano. (2004). Zinc transporter LIVI controls epithelial-mesenchymal transition in zebrafish gastrula organizer. Nature 429: 298-302.
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Zhao, H. and D. Eide. (1996). The ZRT2 gene encodes the low affinity zinc transporter in Saccharomyces cerevisiae. J. Biol. Chem. 271: 23203-23210.
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| Examples: |
| TC# | Name | Organismal Type | Example |
| 2.A.5.1.1 | High affinity zinc uptake transporter, Zrt1 | Yeast, animals, plants | Zrt1 of Saccharomyces cerevisiae |
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| 2.A.5.1.2 | Iron regulated Fit1-mediated plasma membrane high affinity Fe2+ uptake transporter, Irt1 (also takes up Co2+, Mn2+, Zn2+ and possibly Cd2+ and Fe2+) (Korshunova et al., 1999; Schaaf et al., 2006) | Plants, animals, yeast | Irt1 of Arabidopsis thaliana |
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| 2.A.5.1.3 | Zinc/iron uptake transporter, Zip1 (Grass et al., 2005; Grotz et al., 1998) | Plants | Zip1 of Arabidopsis thaliana (O81123) |
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| 2.A.5.1.4 | Iron-regulated Fit1-mediated (coregulated with Irt1) vacuolar high-affinity Fe2+ efflux (from the vacuole into the cytoplasm) transporter, Irt2 (also transports Zn2+ (Schaaf et al., 2006) | Plants | Irt2 of Arabidopsis thaliana (O81850) |
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| Examples: |
| TC# | Name | Organismal Type | Example |
| 2.A.5.2.1 | Golgi Mn2 homeostasis protein (probably pumps Mn2 into cytoplasm), ATX2 (Eide, D.J, 1998) | Yeast | ATX2 of Saccharomyces cerevisiae |
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| Examples: |
| TC# | Name | Organismal Type | Example |
| 2.A.5.3.1 | Growth arrest-inducible protein | Animals | Growth arrest-inducible protein of Homo sapiens |
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| 2.A.5.3.2 | Zn2+ uptake transporter, Zip1 (abundantly expressed; involved in zinc homeostasis rather than acquisition of dietary Zn2+) (Gaither and Eide, 2000). | Animals | Zip1 of Homo sapiens
(Q9NY26)
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| 2.A.5.3.3 | Zn2+ uptake transporter, Zip3 (poorly expressed; involved in Zn2+ homeostasis) (Dufner-Beattie et al., 2003). | Animals | Zip3 of Homo sapiens
(Q9BRY0)
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| Examples: |
| TC# | Name | Organismal Type | Example |
| 2.A.5.4.1 | Zip4 Zn2+ uptake transporter (Acrodermatitis enteropathica zinc-deficiency disease protein) (Dufner-Beattie et al., 2003) | Animals | Zip4 of Homo sapiens |
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| 2.a.5.4.10 | Zn2+ transporter, Zip5 (540aas; 1+3+3 TMSs; processed to a 3+3 TMS protein) (Basolateral membrane; carries out serosal to mucosal transport) | Animals | Zip5 of Homo sapiens (Q6ZMH5) |
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| 2.A.5.4.2 | Zinc transporter, LIV1 (essential for the nuclear localization of the zinc-finger protein Snail, a master regulator of the epithelial-mesenchymal transition in zebrafish gastrulation) (Yamashita et al., 2004) | Animals | LIV1 in Danio rerio (Q6L8F3) |
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| 2.A.5.4.3 | Zip7 golgi Zn2+ uptake (into the cytoplasm) transporter (Ke4, Slc39a7) (Huang et al., 2005). This protein can substitute for Iar1, the indole acetic acid-alanine resistance protein, of A. thaliana (Lasswell et al., 2000) | Animals | Ke4 of Mus musculus (Q92504) |
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| 2.A.5.4.4 | Bidirectional endoplasmic reticular Zn2+ transporter, Yke4 (346 aas; Kumanovics et al., 2006) | Yeast | Yke4 (YIL023c) of Saccharomyces cerevisiae (P40544) |
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| 2.A.5.4.5 | Zip14 Zn2+/Fe2+ uptake transporter (mobilized to the sinusoidal membrane of the hepatocyte during acute inflammation). May also transport other divalent cations including Cd2+. | Animals | Zip14 of Homo sapiens (Q6ZME8) |
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| 2.A.5.4.6 | Zinc transporter, Zip10 (plays an essential role in the migratory activity of highly metastatic breast cancer cells) (Kagara et al., 2007) | Animals | Zip10 of Homo sapiens (Q9ULF5) |
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| 2.A.5.4.7 | The indole acetic acid-alanine resistance protein 1, Iar1 (Lasswell et al., 2000) | Plants | Iar1 of Arabidopsis thaliana (Q9M647) |
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| 2.A.5.4.8 | The divalent cation (M2+): bicarbonate (HCO3-) transporter (M2+:HCO3- = 1:2). Transports Cd2+ and Zn2+, and probably Cu2+, Pb2+, and Hg2+ (based on competitive inhibition studies (Liu et al., 2008)) | Animals | Zip8 of Mus musculus (Q91W10) |
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| 2.A.5.4.9 | Probable Zn2+ transporter, Zip13 (SLC39A13). Mice deficient in Zn transporter Slc39a13/Zip13 show changes in bone, teeth and connective tissue reminiscent of the clinical
spectrum of human Ehlers-Danlos syndrome (EDS) (Fukada et al., 2008). | Animals | Zip13 of Mus musculus (Q8BZH0) |
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| Examples: |
| TC# | Name | Organismal Type | Example |
| 2.A.5.5.1 | Broad specificity heavy metal divalent cation uptake transporter, ZupT (Fe2+, Co2+, Mn2+, Cd2+ and Zn2+ are transported) (Grass et al., 2005). Point mutations change the specificity and kinetics of metal uptake (Taudte and Grass, 2010). | Bacteria | ZupT of E. coli (P0A8H3) |
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| Examples: |
| TC# | Name | Organismal Type | Example |
| 2.A.5.6.1 | The Fe2+ transporter, Lit1, required for intracellular growth and virulence of Leishmania (Huynh and Andrews, 2007) | Protozoans | Lit1 of Leishmania major (Q4Q5V1) |
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| Examples: |
| TC# | Name | Organismal Type | Example |
| 2.A.5.7.1 | Zip family member, ZIP9 (SLC39A9) (307aas; 8 TMSs) | Animals | SLC39A9 of Homo sapiens (Q9NUM3) |
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