(TMS Align V.2 by Vamsee Reddy #symphony.dev@gmail.com)
Sma2 1----------------- 2----------------- 3----------------- 4----------------------- 5------------------- 6------------------------ 7----------------- 8----------------------- 9------------------------ 10----------------- 11------------- -----------
...........................................................................................................MNAPALSSWSLPALR............QRWQPRLPGLLLVGLIAAASLYLAELPWLQAHGLSALTVAIVAGIVVGNTLYPRLAPSSAAGVGFSKHWLLRAGIVLYGLRLTFQDIGHVGVTGVLMDVLVVASTFGLACWLGMRVFKMEREAAMLIGAGSAICGAAAVMAAEPVVRGRAAQ...VTVAVSTVVVFGTLAMFLYPALYALVQSHGWLAMDAQQYGLFTGATVHEVAQVVAAGRAVNEAAADTAVITKMVRVMLLAPFLVALSLWLARDG........KASADGSK.................ARIVVPWFAFGFVAVAGFNSLHLLPAGLQTGLVQLDTVLLAMAMAALGLTTHVSALRQAGLKPLLLALILFGWLLFGG.LAIHQGVLAVLG [11 TMSs]
Stma1 1----------------- 2----------------- 3----------------- 4----------------------- 5------------------- 6------------------------ 7----------------- 8----------------------- 9------------------------ 10----------------- 11------------- -----------
...........................................................................................................MNAPALSSWSLPALR............QRWQPRLPGLLLVGLIAAASLYLAELPWLQAHGLSALTVAIVAGIVVGNTLYPRLAPSSAAGVGFSKHWLLRAGIVLYGLRLTFQDIGHVGVTGVLMDVLVVASTFGLACWLGMRVFKMEREAAMLIGAGSAICGAAAVMAAEPVVRGRAAQ...VTVAVSTVVVFGTLAMFLYPALYALVQSHGWLAMDAQQYGLFTGATVHEVAQVVAAGRAVNEAAADTAVITKMVRVMLLAPFLVALSLWLARDG........KASADGSK.................ARIVVPWFAFGFVAVAGFNSLHLLPAGLQTGLVQLDTVLLAMAMAALGLTTHVSALRQAGLKPLLLALILFGWLLFGG.LAIHQGVLAVLG [11 TMSs]
Sma1 1----------------- 2------------------ 3----------------- 4------------------------ 5------------------- 6----------------------- 7----------------- 8----------------------- 9----------------------- 10----------------- 11------------- -----------
...........................................................................................................MNAPALSPWSLPALR............QRWQPRLPGLVLVGLIAAASLYLAELPWLQAHGLSALTVAIVAGIVVGNTFYPRLAPGSAAGVGFSKHWLLRAGIVLYGLRLTFQDIGHVGVTGVLMDVLVVASTFGLACWLGVRVFKMEREAAMLIGAGSAICGAAAVMAAEPVVRGRAAH...VTVAVSTVVVFGTLAMFLYPALYALVQSHGWLAMDARQYGLFTGATVHEVAQVVAAGRAVNEAAADTAVITKMVRVMLLAPFLIALSLWLARGG........KASADGSK.................ARIVVPWFAFGFVAVAGFNSLHLLPAGLQAGLVQLDTVLLAMAMAALGLTTHVSALRQAGLKPLLLALILFAWLLFGG.LAIHQGVLAVLG [11 TMSs]
Psae1 1----------------- 2------------------ 3------------------- 4------------------- 5----------------- 6----------------- 7------------------- 8---------------------- 9------------------- 10------------------- 11-----------------
...........................................................................................................MHTLPVKTGTRPLA..............QVQKLIPGLLLSAALAGAAILLGRSQWLQHNGISALTLAIVLGIVVGNTLYPRIAAGSAAGVGFSKQILLRAGIILYGLRLTFQDIAGVGLHGVLLDALMLASTFGLACLLGTRLFGLDRTTTLLIGAGSSICGAAAVMATEPVVRGRAEQ...VAVAVSTVVVFGTLGIFLYPALFQSDQDWGLLPRDPGTWGVYIGATVHEVAQVVAAGRSIGIEAADTAVIAKMVRVMMLAPFLILLSAWLARDK........AHRRQHSG................ATKITIPWFAVGFVLVAGLNSLVSLPPALVSHVNDLDTFLLAMAMAGLGLGTHLSAIRRAGLKPLLLAALLFAWLVLGGGFLTRLALA.... [11 TMSs]
Xaor1 1------------------ 2------------------- 3------------------- 4------------------- 5------------------- 6------------------------ 7------------------ 8------------------- 9--------------------- 10------------------- 11------------- -----------
......................................................................................................MPSARRDQAAMHTTAVPAH..............RMRQLVPGLALTGVLACISMQLGKLGWLQANGISALTLAIVLGMLVGNTVYPRLGANAGAGVRFSKANLLRLGIILYGLRLTFQDIGNVGWTGVAIDATVLCSTFGLACFLGMRVFGLDRNTAMLIGAGSSICGAAAVLAAEPVVRGHAEQ...VMIAVATVVVFGTLAMFLYPVLYHLIAHYRWFDLSPTAYGVFAGSTIHEVAQVVAAGRAVSEQAATTAVIAKMVRVMMLAPFLVALSAYLSRDS........AKHTEALDGDRGDGDGDGDGDGTQRSDIVIPWFALGFVAVAGLNSLALLPHALVQQVIDIDTVLLAMAMAGLGLTTHVSAIRKAGIKPLALAAILFAWLVCGG.FAFNVGITAVLN [11 TMSs]
Asp1 1------------------- 2------------------- 3------------------- 4----------------- 5----------------- 6------------------- 7----------------- 8----------------- 9------------------ 10-------------- ----
..............................................................................................................MPLAPLTLASFT............TEPVRWLPGLLLSGAIAAGALHLAGQPFFVGHGLSTLTLAIVFGLLLGNTLYPRLAQTCAPGVGLAKQQLLRTGIVLYGLRLTFQDIAHMGWGGVAVDALALASTFGLACWLGQRVLGLDRRTTLLIGAGSSICGAAAVLATAPVARGRPQD...VAVAVATVVVFGTVGMFLYPALYRWNAAGGWIGMDAQQYGLYVGATVHEVAQVVAAGTAISSHAASTAVIAKMVRVMMLAPFLLILSFLLLRAQ........QASDASRG............ETGSPGAITIPWFALGFVAMAGVNSLDMLPPALVQAGVRLDDLLLAVAMAALGLTTHVHAVRAAGLKPLLLAAALFAWLLVAG.LLLSRYLPAWL. [10 TMSs]
Ppa2 1----------------- 2--------------- --- 3----------------------- 4------------------------ 5----------------- 6------------------- 7----------------- 8----------------------- 9----------------- 10-----------------------
............................................................................................................MVESANEARSSGR.............AGRWKQTGAKLFPGIAVSLLVAVTAQFLSDHYGAPAMLLALLMGLALN..FLAEEGTRTKSGIEYSARTVLRLGVALLGARISVDMLTELGGVMILLVIGGVVATILFGMVAAR.FFGRGWRMALLSGGAVAICGASAAMAIAAVLPKTDKSERNLAFTVMAVTVLSTIAMIAYPPLSS......WFGFTPLESGVFLGGTIHDVAQVVGAGFSVSPEVGETATVVKLIRVSMLAPVVLVFSLAIRAGR........LDADAPGG................TRPPLLPSFVIWFLVLAGLNSFGFIPVSVSYLAEQLSRWALLAAIAAVGIKTSLVRMMEVGGTAIGLVVVETVFLAGFVLAGVHLIG..... [10 TMSs]
Rsp1 1------------------ 2-------------- --- 3----------------- 4------------------ 5---------------------- 6---------------------- 7------------------ 8----------------- 9----------------------- 10----------------- 11-----------------------
..........................................................................................................MAISPPHTDAKIVARG............TANLKAKAQELFPGVAMAIIVAVTAQFLAEHYATPAMLLALLLGIAVS..FLGEEG.KTVPGISFSARTLLRLGIAFLGVRVSMTLMMGLGWDLIALVVGGVVATIGFGLLVAR.FFGHKWRFALLTAGSVAICGASAAMAISAILPRDERSEERLIFTVMGVTVLSTIAMIAYPILVN......FLELNATQAGVFLGGTIHDVAQVVGAGFSISEQAGDSATLVKLIRVAMLAPIVLVASLVIRS..........FAELPSDG................KRPPLLPGFVVAFLGLAGLSSFGLIPTALSEFLSQSSRWLLLIAIAAVGMKTNLKQVLAVGGAAIALIIVETLFIAGLILAGITVLT..... [11 TMSs]
Ccr1 1------------------ 2---------- ------ --- 3----------------- 4--------------- ---- 5------------------ 6------------------- 7------------------- 8---------------------- 9--- --- ------------- 10--------------------- 11-------------------
MIKINHLEIRFQGEQNSPYPGNGNLSNNAFLRIRAILERLGFSQRGIHGPVVHASSQIGGRDLRPAHGRGLELWLHPAGRGSGLPHPWRPALRLRAHRQPDRAPPARASEQPLRQGRRALRRRPDQRRHRPRMTAAALRLGAARIGPGLLAGLLMAVLAKLLSQSLHAPAPLLAVVLGMMLG..ALGLQG.QLGAGLDVFAKPGLRLGVAMMGAQISWSEFAALGGPAVLASGAVVLGGLGIGALAGA.ALGLPLAEALIAAAACSICGASAALAASQAAPSSPENQRTTALVIVGVNLLSTVAMLAYPPIAN......ALGLTAHQAGVFFGLSIHDVAQVAGAGASVSPEVAGTAALAKLSRILWLGPAVVLIGLMLTRTA........QGGRISGL................QAP...PLFVWGFAALAAARGLNLIPPALVSALGACSGFLLLAGVGAISAKLGPKALLEVKPRLAILLVTLTVAVAILAYALTRIFF..... [11 TMSs]
Basp1 1------------------- 2-------------- ----- 3------------------- 4------------------- 5------------------- 6------------------- 7------------------- 8---------------- -- - 9------------------- 10------------------ 11-------------------
................................................................................................................MNKLQYIFKN.........TLAARLPKWSSGVLLLLCIAGVSKYLGT..LFP..LVGSILFAIMIGIVIN..NTTGVHEVFQPGLSLTLKKLLKAAVVMLGVSLSFADILYIGRQSFLIILVSVILGIVITVWFGK.LLKMDRKLALLIGVGTSICGATAISAVKGVIDSDDNE...TAYAISVIVFFNLIAFFLYPVIGH......ILDLTATSFGIWAGTAVHDTSSSIAVGYVYGNEAGQVATTVKLARTLFLLPLILVLP.....IL........LRNE..............KQKGSQAAKKAFPWFVLLFLGVSVINSFVVIPAPAEEIVTDTAKFIIIMVMGAVGLQVNLKQFAKLGFKPLIAGLVASLAVSVISLMMILFL...... [11 TMSs]
Aor1 1------------------ - 2--------------- --- 3------------------ 4------------------- 5-------------------- 6--------------------- 7------------------- 8------------------- 9------------------- 10----------------- 11------------------------
.....................................................................................................................................MEFIKKCSVGIFFAAILAVVSNFISG..ILPNHIIGAGVFALIIGMMLN..PLTSKYPVFQQGFNFTSKKILRTAIILMGATLSFSQVLEVGKFSLVVMIFTLITAFGGGYLVGK.LFHMDWKLSSLISAGTGICGGSAIASIAPVIDAEDSD...IAYAISATFIFDVLMVVLFPIMGR......YFGMSDLGYGLWTGTAVNDTSSVVAAGYAFSDIAGGFSVIVKLTRTLSIVPVVLIFSYINQRIV........RKNETEYAFSNGSAPSTIQQNKKVEITKIFPWFILMFLGVVTIKSLGILPEFISSNISKISKFLMVMSLGAIGFKTNFKKLSKSGFLPMLHGFIISALVVIVSFLAQMAIGQL... [11 TMSs]
Csp8 1----------------- 2-------------- ---- 3------------------ 4----------------- 5------------------- 6------------------- 7------------------ 8------------------ 9----------------- 10---------------------- 11-------------------
.................................................................................................................MYTQMKN................TRSILPGLMISILISLISQYLTN....FIPNLGAALIAIFLGILLG..NTFLNKPYLKRGTKFSEKTLLEWSIVLNGMILDFQIIKQVGSAGFIFVILQMVLTILFAYWIGR.TMKFNKKMSLLMGAGNAVCGSSAIGTVSPVIEADKKD...KAMSITIVNVMGTLLMVLLPILSS.....VLYQNEVVQTSALIGGTVQSIGQVVASAKLVSTDVTNLSIVFKLMRVLLIVGVALCFSKLNTKEEEPLFSKTTTSSTSEVK..............KSSSLMTVPWFIIGFFFLFMLRSFLPLPSLVIHSSEVISNQFEITALAAIGLQVKFSDILKEGPRTMLYGLLIGFFQIVLAVVLITWLF..... [11 TMSs]
Tsp3 1------------------- 2-------------- ----- 3------------------- 4------------------- 5------------------- 6------------------- 7------------------- 8------------------ 9------------------- 10------------------ 11-------------------
...........................................................................................................MKTRNFMQQKFVN................VKELLPGLIVCIIIGLISKYVGT....FVPALGGATIAILLGLLLG..NTVLTHKSFYKGVRFSESNLLSYSIVLLGGTLSYKVILQLGVSGVSFIVLQMILTIIFCILVGK.KLGFSEDFRLLMAAGNAVCGSSAIGATAPVIKANDVD...KSITITLVNLTGTILMMILPFLTS.....ILYGNETIKSSALIGGTLQSVGQVVGSGSMVNHDVLQYATIFKIVRIIFLVFVILSFAKLKKDEE.......NHEAELHHQ..............QPKAKIKIPWYVIGFFIMCFLFSVGIINENISHGFKQISNYLEIFALAGIGMSVKFKDLMKAGVKSGIYCLLIGIAQIMIAVVLIGILL..... [11 TMSs]