Global Alignment with highlighted TMSs:

Description: This program will mark your TMSs on a global alignment. TMS prediction is carryed out by HMMTOP. Due to the licensing restrictions of HMMTOP only academic usage is allowed. We will soon provide add an alternative TMS prediction program that commercial sites may use.

Matrix: PAM20 PAM40 PAM120 PAM250 BLOSUM50 BLOSUM62 BLOSUM80 PHAT70 PHAT75 PHAT80 PHAT85 SLIM160 Gap opening penalty: 0 5 8 11 14 17 20 Gap extension penalty: 0 1 2 5 10

Enter protein UniProt ID or FASTA sequence:

Enter protein UniProt ID or FASTA sequence: