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3.A.20.1.1
The peroxisomal importing translocon with receptors: Pex5p and Pex7p; and receptor facilitator: Pex4p. Peroxisomal biogenesis factor PEX26 is a membrane anchor for the multi-subunit PEX1-PEX6 protein complex that controls ubiquitination and dislocation of PEX5 cargo receptors for peroxisomal matrix protein import. PEX26 associates with the peroxisomal translocation pore via PEX14 (Guder et al. 2018). Luminal peroxisomal proteins are imported from the cytosol by mobile receptors, which then recycle back to the cytosol by a poorly understood process (Feng et al. 2022). Recycling requires receptor modification by a membrane-embedded ubiquitin ligase complex comprising three RING finger domain-containing proteins (Pex2, Pex10 and Pex12). Feng et al. 2022 reported a cryo-EM structure of the ligase complex, which together with biochemical and in vivo experiments reveals its function as a retrotranslocation channel for peroxisomal import receptors. Each subunit of the complex contributes five transmembrane segments that co-assemble into an open channel. The three ring finger domains form a cytosolic tower, with ring finger 2 (RF2) positioned above the channel pore. The N terminus of a recycling receptor is inserted from the peroxisomal lumen into the pore and monoubiquitylated by RF2 to enable extraction into the cytosol. If recycling is compromised, receptors are polyubiquitylated by the concerted action of RF10 and RF12 and degraded. This polyubiquitylation pathway also maintains the homeostasis of other peroxisomal import factors. Thus, a crucial step during peroxisomal protein import is clarified, and it explains why mutations in the ligase complex cause human disease (Feng et al. 2022).

Accession Number:O60683
Protein Name:Peroxisome biogenesis factor 10
Length:326
Molecular Weight:37069.00
Species:Homo sapiens (Human) [9606]
Number of TMSs:2
Location1 / Topology2 / Orientation3: Peroxisome membrane1 / Peripheral membrane protein2
Substrate protein polypeptide chain

Cross database links:

RefSeq: NP_002608.1    NP_722540.1   
Entrez Gene ID: 5192   
Pfam: PF04757    PF00097   
OMIM: 202370  phenotype
214100  phenotype
601539  phenotype
602859  gene+phenotype
KEGG: hsa:5192   

Gene Ontology

GO:0005779 C:integral to peroxisomal membrane
GO:0005778 C:peroxisomal membrane
GO:0005515 F:protein binding
GO:0008022 F:protein C-terminus binding
GO:0008270 F:zinc ion binding
GO:0016558 P:protein import into peroxisome matrix

References (8)

[1] “Identification of PEX10, the gene defective in complementation group 7 of the peroxisome-biogenesis disorders.”  Warren D.S.et.al.   9683594
[2] “Mutations in PEX10 is the cause of Zellweger peroxisome deficiency syndrome of complementation group B.”  Okumoto K.et.al.   9700193
[3] “Complete sequencing and characterization of 21,243 full-length human cDNAs.”  Ota T.et.al.   14702039
[4] “The DNA sequence and biological annotation of human chromosome 1.”  Gregory S.G.et.al.   16710414
[5] “The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).”  The MGC Project Teamet.al.   15489334
[6] “PEX19 binds multiple peroxisomal membrane proteins, is predominantly cytoplasmic, and is required for peroxisome membrane synthesis.”  Sacksteder K.A.et.al.   10704444
[7] “Human pex19p binds peroxisomal integral membrane proteins at regions distinct from their sorting sequences.”  Fransen M.et.al.   11390669
[8] “Identification of novel mutations and sequence variation in the Zellweger syndrome spectrum of peroxisome biogenesis disorders.”  Yik W.Y.et.al.   19105186

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Predict TMSs (Predict number of transmembrane segments)
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FASTA formatted sequence
1:	MAPAAASPPE VIRAAQKDEY YRGGLRSAAG GALHSLAGAR KWLEWRKEVE LLSDVAYFGL 
61:	TTLAGYQTLG EEYVSIIQVD PSRIHVPSSL RRGVLVTLHA VLPYLLDKAL LPLEQELQAD 
121:	PDSGRPLQGS LGPGGRGCSG ARRWMRHHTA TLTEQQRRAL LRAVFVLRQG LACLQRLHVA 
181:	WFYIHGVFYH LAKRLTGITY LRVRSLPGED LRARVSYRLL GVISLLHLVL SMGLQLYGFR 
241:	QRQRARKEWR LHRGLSHRRA SLEERAVSRN PLCTLCLEER RHPTATPCGH LFCWECITAW 
301:	CSSKAECPLC REKFPPQKLI YLRHYR