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3.A.2.1.1
H+-translocating F-type ATPase. The loop-regions in subunits a and c that are implicated in H+ transport likely interact in a single structural domain which then functions in gating H+ release to the cytoplasm (Steed et al. 2014). Three different states that relate to rotation of the enzyme have been observed, with the central stalk's epsilon subunit in an extended autoinhibitory conformation in all three states (Sobti et al. 2016). The Fo motor consists of seven transmembrane helices and a decameric c-ring, and invaginations on either side of the membrane indicate the entry and exit channels for protons. The proton translocating subunit contains near parallel helices inclined by ~30 degrees to the membrane, a feature corresponding to rotary ATPases. This rotary ATPase subtype, the peripheral stalk, is resolved over the entire length of the complex, revealing the F1 attachment points and a coiled-coil that bifurcates toward the membrane with its helices separating to embrace subunit a from two sides (Sobti et al. 2016). Reversible beta/epsilon (stator/rotor) interactions may block rotation and thereby inhibit catalysis (Bulygin et al. 2004). Current views on unidirectional catalysis by the F1·Fo ATP synthase/ATPase have been reviewed (Zharova et al. 2023). Hypermucoviscosity is a hallmark of hypervirulent Klebsiella pneumoniae, and OmpR regulates its energy status, via the F-type ATPase of this organism; this influences hypermucoviscosity (Wang et al. 2023).

Accession Number:P0AB98
Protein Name:ATP synthase a chain ATP6 aka ATPB aka UNCB aka PAPD aka B3738
Length:271
Molecular Weight:30303.00
Species:Escherichia coli [83333]
Number of TMSs:6
Location1 / Topology2 / Orientation3: Cell inner membrane1 / Multi-pass membrane protein2
Substrate hydron

Cross database links:

DIP: DIP-47956N
RefSeq: AP_004049.1    NP_418194.1   
Entrez Gene ID: 948252   
Pfam: PF00119   
BioCyc: EcoCyc:ATPB-MONOMER    ECOL168927:B3738-MONOMER    MetaCyc:ATPB-MONOMER   
KEGG: ecj:JW3716    eco:b3738   

Gene Ontology

GO:0016021 C:integral to membrane
GO:0005886 C:plasma membrane
GO:0045263 C:proton-transporting ATP synthase complex, c...
GO:0046933 F:hydrogen ion transporting ATP synthase acti...
GO:0042777 P:plasma membrane ATP synthesis coupled proto...

References (20)

[1] “DNA sequence around the Escherichia coli unc operon. Completion of the sequence of a 17 kilobase segment containing asnA, oriC, unc, glmS and phoS.”  Walker J.E.et.al.   6395859
[2] “The atp operon: nucleotide sequence of the promoter and the genes for the membrane proteins, and the delta subunit of Escherichia coli ATP-synthase.”  Gay N.J.et.al.   6272190
[3] “The nucleotide sequence of the atp genes coding for the F0 subunits a, b, c and the F1 subunit delta of the membrane bound ATP synthase of Escherichia coli.”  Nielsen J.et.al.   6278247
[4] “Nucleotide sequence of the genes for F0 components of the proton-translocating ATPase from Escherichia coli: prediction of the primary structure of F0 subunits.”  Kanazawa H.et.al.   6277311
[5] “Structure and function of H+-ATPase: what we have learned from Escherichia coli H+-ATPase.”  Kanazawa H.et.al.   6301339
[6] “Impaired proton conductivity resulting from mutations in the a subunit of F1F0 ATPase in Escherichia coli.”  Cai B.D.et.al.   2874137
[7] “DNA sequence and analysis of 136 kilobases of the Escherichia coli genome: organizational symmetry around the origin of replication.”  Burland V.D.et.al.   7686882
[8] “The complete genome sequence of Escherichia coli K-12.”  Blattner F.R.et.al.   9278503
[9] “Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110.”  Hayashi K.et.al.   16738553
[10] “Overproduction of subunit a of the F0 component of proton-translocating ATPase inhibits growth of Escherichia coli cells.”  Kanazawa H.et.al.   6325392
[11] “The promoters of the atp operon of Escherichia coli K12.”  Nielsen J.et.al.   6318052
[12] “Genetic evidence for interaction between the a and b subunits of the F0 portion of the Escherichia coli proton translocating ATPase.”  Kumamoto C.A.et.al.   2874136
[13] “Proton translocation by the F1F0ATPase of Escherichia coli. Mutagenic analysis of the a subunit.”  Cain B.D.et.al.   2536742
[14] “Temperature-sensitive mutations at the carboxy terminus of the alpha subunit of the Escherichia coli F1F0 ATP synthase.”  Vik S.B.et.al.   1829729
[15] “A topological analysis of subunit alpha from Escherichia coli F1F0-ATP synthase predicts eight transmembrane segments.”  Lewis M.L.et.al.   2162353
[16] “The transmembrane topology of the a subunit from the ATPase in Escherichia coli analyzed by PhoA protein fusions.”  Bjorbaek C.et.al.   2137094
[17] “Transmembrane topology of Escherichia coli H(+)-ATPase (ATP synthase) subunit a.”  Yamada H.et.al.   8706824
[18] “Transmembrane topography of subunit a in the Escherichia coli F1F0 ATP synthase.”  Valiyaveetil F.I.et.al.   9632683
[19] “Global topology analysis of the Escherichia coli inner membrane proteome.”  Daley D.O.et.al.   15919996
[20] “Structural changes linked to proton translocation by subunit c of the ATP synthase.”  Rastogi V.K.et.al.   10580496
Structure:
1C17   5T4O   5T4P   5T4Q   6OQR   6OQS   6OQT   6OQU   6OQV   6OQW   [...more]

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Predict TMSs (Predict number of transmembrane segments)
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FASTA formatted sequence
1:	MASENMTPQD YIGHHLNNLQ LDLRTFSLVD PQNPPATFWT INIDSMFFSV VLGLLFLVLF 
61:	RSVAKKATSG VPGKFQTAIE LVIGFVNGSV KDMYHGKSKL IAPLALTIFV WVFLMNLMDL 
121:	LPIDLLPYIA EHVLGLPALR VVPSADVNVT LSMALGVFIL ILFYSIKMKG IGGFTKELTL 
181:	QPFNHWAFIP VNLILEGVSL LSKPVSLGLR LFGNMYAGEL IFILIAGLLP WWSQWILNVP 
241:	WAIFHILIIT LQAFIFMVLT IVYLSMASEE H