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3.A.2.1.1
H+-translocating F-type ATPase. The loop-regions in subunits a and c that are implicated in H+ transport likely interact in a single structural domain which then functions in gating H+ release to the cytoplasm (Steed et al. 2014). Three different states that relate to rotation of the enzyme have been observed, with the central stalk's epsilon subunit in an extended autoinhibitory conformation in all three states (Sobti et al. 2016). The Fo motor consists of seven transmembrane helices and a decameric c-ring, and invaginations on either side of the membrane indicate the entry and exit channels for protons. The proton translocating subunit contains near parallel helices inclined by ~30 degrees to the membrane, a feature corresponding to rotary ATPases. This rotary ATPase subtype, the peripheral stalk, is resolved over the entire length of the complex, revealing the F1 attachment points and a coiled-coil that bifurcates toward the membrane with its helices separating to embrace subunit a from two sides (Sobti et al. 2016). Reversible beta/epsilon (stator/rotor) interactions may block rotation and thereby inhibit catalysis (Bulygin et al. 2004). Current views on unidirectional catalysis by the F1·Fo ATP synthase/ATPase have been reviewed (Zharova et al. 2023). Hypermucoviscosity is a hallmark of hypervirulent Klebsiella pneumoniae, and OmpR regulates its energy status, via the F-type ATPase of this organism; this influences hypermucoviscosity (Wang et al. 2023).

Accession Number:P0ABA4
Protein Name:ATP synthase delta chain ATPD aka ATPH aka UNCH aka PAPE aka B3735
Length:177
Molecular Weight:19332.00
Species:Escherichia coli [83333]
Location1 / Topology2 / Orientation3: Cell inner membrane1 / Peripheral membrane protein2
Substrate hydron

Cross database links:

DIP: DIP-47921N
RefSeq: AP_004052.1    NP_418191.1   
Entrez Gene ID: 948254   
Pfam: PF00213   
BioCyc: EcoCyc:ATPH-MONOMER    ECOL168927:B3735-MONOMER    MetaCyc:ATPH-MONOMER   
KEGG: ecj:JW3713    eco:b3735   

Gene Ontology

GO:0005886 C:plasma membrane
GO:0045261 C:proton-transporting ATP synthase complex, c...
GO:0046933 F:hydrogen ion transporting ATP synthase acti...
GO:0015986 P:ATP synthesis coupled proton transport

References (10)

[1] “DNA sequence around the Escherichia coli unc operon. Completion of the sequence of a 17 kilobase segment containing asnA, oriC, unc, glmS and phoS.”  Walker J.E.et.al.   6395859
[2] “The atp operon: nucleotide sequence of the promoter and the genes for the membrane proteins, and the delta subunit of Escherichia coli ATP-synthase.”  Gay N.J.et.al.   6272190
[3] “The nucleotide sequence of the atp genes coding for the F0 subunits a, b, c and the F1 subunit delta of the membrane bound ATP synthase of Escherichia coli.”  Nielsen J.et.al.   6278247
[4] “Nucleotide sequence of the gene coding for the delta subunit of proton translocating ATPase of Escherichia coli.”  Mabuchi K.et.al.   6458296
[5] “Structure and function of H+-ATPase: what we have learned from Escherichia coli H+-ATPase.”  Kanazawa H.et.al.   6301339
[6] “DNA sequence and analysis of 136 kilobases of the Escherichia coli genome: organizational symmetry around the origin of replication.”  Burland V.D.et.al.   7686882
[7] “The complete genome sequence of Escherichia coli K-12.”  Blattner F.R.et.al.   9278503
[8] “Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110.”  Hayashi K.et.al.   16738553
[9] “Protein complexes of the Escherichia coli cell envelope.”  Stenberg F.et.al.   16079137
[10] “Solution structure of the N-terminal domain of the delta subunit of the E. coli ATPsynthase.”  Wilkens S.et.al.   9164460
Structure:
1ABV   2A7U   5T4O   5T4P   5T4Q   6OQR   6OQS   6OQT   6OQU   6OQV   [...more]

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FASTA formatted sequence
1:	MSEFITVARP YAKAAFDFAV EHQSVERWQD MLAFAAEVTK NEQMAELLSG ALAPETLAES 
61:	FIAVCGEQLD ENGQNLIRVM AENGRLNALP DVLEQFIHLR AVSEATAEVD VISAAALSEQ 
121:	QLAKISAAME KRLSRKVKLN CKIDKSVMAG VIIRAGDMVI DGSVRGRLER LADVLQS