TCDB is operated by the Saier Lab Bioinformatics Group
« See all members of the family


3.A.2.1.1
H+-translocating F-type ATPase. The loop-regions in subunits a and c that are implicated in H+ transport likely interact in a single structural domain which then functions in gating H+ release to the cytoplasm (Steed et al. 2014). Three different states that relate to rotation of the enzyme have been observed, with the central stalk's epsilon subunit in an extended autoinhibitory conformation in all three states (Sobti et al. 2016). The Fo motor consists of seven transmembrane helices and a decameric c-ring, and invaginations on either side of the membrane indicate the entry and exit channels for protons. The proton translocating subunit contains near parallel helices inclined by ~30 degrees to the membrane, a feature corresponding to rotary ATPases. This rotary ATPase subtype, the peripheral stalk, is resolved over the entire length of the complex, revealing the F1 attachment points and a coiled-coil that bifurcates toward the membrane with its helices separating to embrace subunit a from two sides (Sobti et al. 2016). Reversible beta/epsilon (stator/rotor) interactions may block rotation and thereby inhibit catalysis (Bulygin et al. 2004). Current views on unidirectional catalysis by the F1·Fo ATP synthase/ATPase have been reviewed (Zharova et al. 2023). Hypermucoviscosity is a hallmark of hypervirulent Klebsiella pneumoniae, and OmpR regulates its energy status, via the F-type ATPase of this organism; this influences hypermucoviscosity (Wang et al. 2023).

Accession Number:P0ABB4
Protein Name:ATP synthase subunit beta ATPB aka ATPD aka UNCD aka PAPB aka B3732
Length:460
Molecular Weight:50325.00
Species:Escherichia coli [83333]
Number of TMSs:1
Location1 / Topology2 / Orientation3: Cell inner membrane1 / Peripheral membrane protein2
Substrate hydron

Cross database links:

DIP: DIP-31846N
RefSeq: AP_004055.1    NP_418188.1   
Entrez Gene ID: 948244   
Pfam: PF00006    PF00306    PF02874   
BioCyc: EcoCyc:ATPD-MONOMER    ECOL168927:B3732-MONOMER    MetaCyc:ATPD-MONOMER   
KEGG: ecj:JW3710    eco:b3732   

Gene Ontology

GO:0005886 C:plasma membrane
GO:0045261 C:proton-transporting ATP synthase complex, c...
GO:0005524 F:ATP binding
GO:0046933 F:hydrogen ion transporting ATP synthase acti...
GO:0008553 F:hydrogen-exporting ATPase activity, phospho...
GO:0005515 F:protein binding
GO:0046961 F:proton-transporting ATPase activity, rotati...
GO:0042777 P:plasma membrane ATP synthesis coupled proto...

References (12)

[1] “DNA sequence around the Escherichia coli unc operon. Completion of the sequence of a 17 kilobase segment containing asnA, oriC, unc, glmS and phoS.”  Walker J.E.et.al.   6395859
[2] “The atp operon: nucleotide sequence of the genes for the gamma, beta, and epsilon subunits of Escherichia coli ATP synthase.”  Saraste M.et.al.   6272217
[3] “Structure and function of H+-ATPase: what we have learned from Escherichia coli H+-ATPase.”  Kanazawa H.et.al.   6301339
[4] “Nucleotide sequence of the genes for beta and epsilon subunits of proton-translocating ATPase from Escherichia coli.”  Kanazawa H.et.al.   6285901
[5] “DNA sequence and analysis of 136 kilobases of the Escherichia coli genome: organizational symmetry around the origin of replication.”  Burland V.D.et.al.   7686882
[6] “The complete genome sequence of Escherichia coli K-12.”  Blattner F.R.et.al.   9278503
[7] “Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110.”  Hayashi K.et.al.   16738553
[8] “Nucleotide sequence of the genes coding for alpha, beta and gamma subunits of the proton-translocating ATPase of Escherichia coli.”  Kanazawa H.et.al.   6277310
[9] “Catalytic and noncatalytic nucleotide binding sites of the Escherichia coli F1 ATPase. Amino acid sequences of beta-subunit tryptic peptides labeled with 2-azido-ATP.”  Wise J.G.et.al.   2889623
[10] “Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12.”  Link A.J.et.al.   9298646
[11] “Mutations in Ser174 and the glycine-rich sequence (Gly149, Gly150, and Thr156) in the beta subunit of Escherichia coli H(+)-ATPase.”  Iwamoto A.et.al.   1832155
[12] “Structural features of the gamma subunit of the Escherichia coli F(1) ATPase revealed by a 4.4-A resolution map obtained by X-ray crystallography.”  Hausrath A.C.et.al.   10570135
Structure:
1D8S   3OAA   5T4O   5T4P   5T4Q   6OQR   6OQS   6OQT   6OQU   6OQV   [...more]

External Searches:

Analyze:

Predict TMSs (Predict number of transmembrane segments)
Window Size: Angle:  
FASTA formatted sequence
1:	MATGKIVQVI GAVVDVEFPQ DAVPRVYDAL EVQNGNERLV LEVQQQLGGG IVRTIAMGSS 
61:	DGLRRGLDVK DLEHPIEVPV GKATLGRIMN VLGEPVDMKG EIGEEERWAI HRAAPSYEEL 
121:	SNSQELLETG IKVIDLMCPF AKGGKVGLFG GAGVGKTVNM MELIRNIAIE HSGYSVFAGV 
181:	GERTREGNDF YHEMTDSNVI DKVSLVYGQM NEPPGNRLRV ALTGLTMAEK FRDEGRDVLL 
241:	FVDNIYRYTL AGTEVSALLG RMPSAVGYQP TLAEEMGVLQ ERITSTKTGS ITSVQAVYVP 
301:	ADDLTDPSPA TTFAHLDATV VLSRQIASLG IYPAVDPLDS TSRQLDPLVV GQEHYDTARG 
361:	VQSILQRYQE LKDIIAILGM DELSEEDKLV VARARKIQRF LSQPFFVAEV FTGSPGKYVS 
421:	LKDTIRGFKG IMEGEYDHLP EQAFYMVGSI EEAVEKAKKL