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1.F.1.1.1
The SNARE fusion complex, fusing neurotransmitter vesicles with the presynaptic membrane. Ca2+ acts on the synaptic vesicle synaptotagmin1 (synaptotagmin I; SytI, Syt1, SSVP65, SYT) to trigger rapid exocytosis (Chapman, 2008).  Syt1 is a major Ca2+ sensor for fast neurotransmitter release. It contains tandem Ca2+-binding C2 domains (C2AB), a single transmembrane α-helix and a highly charged 60-residue- long linker in between. The linker region of Syt1 is essential for its two signature functions: Ca2+-independent vesicle docking and Ca2+-dependent fusion pore opening. The linker contains the basic-amino acid-rich N-terminal region and the acidic amino acid-rich C-terminal region (Lai et al. 2013).  The intrinsically disordered region between Syt I's transmembrane helix and the first C2 domain interats with vesicular lipids and modulates Ca2+ binding to C2 (Fealey et al. 2016). t-SNARE and v-SNARE interact in their C-terminal TMSs to promote pore opening (Wu et al. 2016).  Both sides of a trans-SNARE complex can drive pore opening suggesting an indentation model in which multiple SNARE C-termini cooperate in opening the fusion pore by locally deforming the inner leaflets (D'Agostino et al. 2016). The TMSs of SNARE proteins regulate the fusion process (Wu et al. 2017). The cysteine-rich domain of SNAP-23 regulates its membrane association and exocytosis from mast cells (Agarwal et al. 2019). Snc1 is trafficked between the endosomal system and the Golgi apparatus via multiple pathways, providing evidence for protein quality control surveillance of a SNARE protein in the endo-vacuolar system (Ma and Burd 2019). MemDis is a novel prediction method, utilizing a convolutional neural network and long short-term memory networks for predicting disordered regions in transmembrane proteins (Dobson and Tusnády 2021). Curcuminoids (bisdemethoxycurcumin and curcumin) modulate the release of neurotransmitters during exocytosis (Li et al. 2016). Oxidative stress-induced inhibition of VAMP8 trafficking to lysosomes is associated with the development of neurodegenerative diseases due to blocked autophagosome-lysosome fusion (Ohnishi et al. 2022). Calcium (Ca2+) plays a critical role in triggering all three primary modes of neurotransmitter release (synchronous, asynchronous, and spontaneous). Synaptotagmin1, a protein with two C2 domains, is the first isoform of the synaptotagmin family that was identified and demonstrated as the primary Ca2+ sensor for synchronous neurotransmitter release (Zhou 2023).  Other isoforms of the synaptotagmin family as well as other C2 proteins such as members of the double C2 domain protein family were found to act as Ca2+ sensors for different modes of neurotransmitter release. A new model, release-of-inhibition, for the initiation of Ca2+-triggered synchronous neurotransmitter release has been proposed. Synaptotagmin1 binds Ca2+ via its two C2 domains and relieves a primed pre-fusion machinery. Before Ca2+ triggering, synaptotagmin1 interacts Ca2+ independently with partially zippered SNARE complexes, the plasma membrane, phospholipids, and other components to form a primed pre-fusion state that is ready for fast release. However, membrane fusion is inhibited until the arrival of Ca2+ reorients the Ca2+-binding loops of the C2 domain to perturb the lipid bilayers, help bridge the membranes, and/or induce membrane curvatures, which serves as a power stroke to activate fusion (Zhou 2023).  Synaptobrevin2 (Syb2) monomers and dimers differentially engage in regulating the trans-SNARE assembly during membrane fusion. The differential recruitment of two syb2 structures at the membrane fusion site has consequences in regulating individual nascent fusion pore properties. A few syb2 transmembrane domain residues control monomer/dimer conversion. Thus, syb2 monomers and dimers are differentially recruited at the release sites for regulating membrane fusion events (Patil et al. 2024).  

Accession Number:P60880
Protein Name:SNAP-25 aka Super protein
Length:206
Molecular Weight:23315.00
Species:Homo sapiens (Human) [9606]
Location1 / Topology2 / Orientation3: Cytoplasm1 / Lipid-anchor2
Substrate

Cross database links:

DIP: DIP-34554N
RefSeq: NP_003072.2    NP_570824.1   
Entrez Gene ID: 6616   
Pfam: PF00835    PF05739   
OMIM: 600322  gene
KEGG: hsa:6616   

Gene Ontology

GO:0030054 C:cell junction
GO:0030426 C:growth cone
GO:0048471 C:perinuclear region of cytoplasm
GO:0045202 C:synapse
GO:0019717 C:synaptosome
GO:0001504 P:neurotransmitter uptake
GO:0016081 P:synaptic vesicle docking during exocytosis

References (8)

[1] “Human cDNA clones encoding two different isoforms of the nerve terminal protein SNAP-25.”  Bark I.C.et.al.   8112622
[2] “Cloning and sequence analysis of the human SNAP25 cDNA.”  Zhao N.et.al.   8056350
[3] “Insulin-responsive tissues contain the core complex protein SNAP-25 (synaptosomal-associated protein 25) A and B isoforms in addition to syntaxin 4 and synaptobrevins 1 and 2.”  Jagadish M.N.et.al.   8760387
[4] “Complete sequencing and characterization of 21,243 full-length human cDNAs.”  Ota T.et.al.   14702039
[5] “The DNA sequence and comparative analysis of human chromosome 20.”  Deloukas P.et.al.   11780052
[6] “The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).”  The MGC Project Teamet.al.   15489334
[7] “SNAP-25 is also an iron-sulfur protein.”  Huang Q.et.al.   18375205
[8] “Three-dimensional structure of the complexin/SNARE complex.”  Chen X.et.al.   11832227
Structure:
1KIL   1XTG   2N1T   3DDA   3DDB   3RK2   3RK3   3RL0   3ZUR   5W7I   [...more]

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Predict TMSs (Predict number of transmembrane segments)
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FASTA formatted sequence
1:	MAEDADMRNE LEEMQRRADQ LADESLESTR RMLQLVEESK DAGIRTLVML DEQGEQLERI 
61:	EEGMDQINKD MKEAEKNLTD LGKFCGLCVC PCNKLKSSDA YKKAWGNNQD GVVASQPARV 
121:	VDEREQMAIS GGFIRRVTND ARENEMDENL EQVSGIIGNL RHMALDMGNE IDTQNRQIDR 
181:	IMEKADSNKT RIDEANQRAT KMLGSG